| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5496 |
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| Symbol | |
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| ID | 6179869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 2746739 |
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| End bp | 2748301 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641685251 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001812156 |
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| Protein GI | 172064505 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.414779 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.000876281 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCAGAAA CCGACTACGC AATGCCCAGC GAATCCGGCC TGACGGGCCG TGTCGCCGCT
CATCTGCGCC GGCTCCTGCT GCCGCACCTG ATCTTCTATT CGGGGCTGCT GCTCGGTCTG
CTCCTGCTGC TGCTGTGCGC AATCGTGCTG TACGAGGCAC GCATCGACGC GCGCGACCGT
GCGCGCATCA CGCAGCAGAA CATCGCGTTG ATGGCGTCGT GGGACATCGA GCGCAACATC
GAGTTCTTTG CGCTGTCGCT GCAGGCTGTC GTCGAAGGCG AGAACGATCC GGCGGTCGGT
GCGCTGCCGA TGCCGCTGCG CCGCCAGGTG CTGTTCGATC GCGCGACCAC GGCCAAGTAT
CTCGGCGGCA TCTACGTGCT CGACGCGAAC GGCGACATTG CGGTCGACGG CAAGAGCGAC
GTGCCGCGCA AGGCCAATTT CGGCAACGAA CAGTATTTCA CCGTGCATCG CGACCACCCG
GACGTCGGCC TGTACGTCAG CGATCCGTAC CATTCGCGGC TGCGCGCCGG CTCGCCGAGC
ATCGCGCTCA GCCGGCGCAT CACGCGGCCC GACGGGTCGT TCGGCGGCGT CGCCGTGATA
TCGATCCGGC TCGAATATTT CCAGAACCTG TTCTCGCGCC TCTCCCTCGG CGATCGCGGG
TCGATGGCGC TGATCAATAC GTCCGGCCTG ATGCTCGCGC GCCAGCCGTA CGAACCGGCG
ATCGTCGGCC GCAACATCAG CAAGGCCAGC ACGTTCCGGC ACTTCATGAC CGCCAGCGAA
GGCAGCTTCT CTGACACCGC ATCGATCGAC GGCGTGCGGC GCCTGTACGT GTTCCGGCAC
CTCGAGAACC TGCCACTGAT CATCATGGTC GCGCGCTCGG AAGCCGACAC CTACGCCGCG
TGGTACGACC GCGCGATCCC GATCGGCTCG GCGATGGCCG TGCTCGCGCT CGGCTTCGTC
GGCCTGTCGC TGCTGCTCGA CGTGCAGTTG CGCAAGCGTC ACCGCGCGGA AACCGAACTG
CAGGCGCTCG CGCGCACCGA CGGCCTCACC GGCCTCGACA ACCGCCGGAT GCTCGACGTC
ACGCTCGCTC GCGAATGGCG CCGCGCGGCG CGTTCGCAGC ACGCGCTGTC GCTGCTGTTC
GTCGACGTCG ACCACTTCAA GCGCTACAAC GACACGCAGG GCCACCAGGC CGGCGACGAC
GCGCTCGCCG CGGTCGCCCG CTGCATCGCC GGCTGCCTGC ACCGGCCGGC CGACTATGCG
GCCCGTTACG GCGGCGAGGA GTTCGTCGTC GTGTTGCCCA ATGTCGACAC GAACGGCGCC
GTGACGATCG CCGAATCGAT CCGCACCGGC ATCCTCGATC TCGGCATCCG GCACGACACG
GGCGTGTCCG GGCGCCTGAC CGCGAGCATC GGCGTGACGA CCTGCTATCC GGAGCGCGAC
GACAGCATCC AGGCCGCGCT GAAGCTCGCC GATGACGCGC TGTACCGCGC GAAGGAATCC
GGGCGCAATC AGGTCGTCGT ACTGACGTCC TCGTCGGTCG AGCGGATGCC GCGGCGCGCC
TGA
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| Protein sequence | MAETDYAMPS ESGLTGRVAA HLRRLLLPHL IFYSGLLLGL LLLLLCAIVL YEARIDARDR
ARITQQNIAL MASWDIERNI EFFALSLQAV VEGENDPAVG ALPMPLRRQV LFDRATTAKY
LGGIYVLDAN GDIAVDGKSD VPRKANFGNE QYFTVHRDHP DVGLYVSDPY HSRLRAGSPS
IALSRRITRP DGSFGGVAVI SIRLEYFQNL FSRLSLGDRG SMALINTSGL MLARQPYEPA
IVGRNISKAS TFRHFMTASE GSFSDTASID GVRRLYVFRH LENLPLIIMV ARSEADTYAA
WYDRAIPIGS AMAVLALGFV GLSLLLDVQL RKRHRAETEL QALARTDGLT GLDNRRMLDV
TLAREWRRAA RSQHALSLLF VDVDHFKRYN DTQGHQAGDD ALAAVARCIA GCLHRPADYA
ARYGGEEFVV VLPNVDTNGA VTIAESIRTG ILDLGIRHDT GVSGRLTASI GVTTCYPERD
DSIQAALKLA DDALYRAKES GRNQVVVLTS SSVERMPRRA
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