| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5491 |
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| Symbol | |
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| ID | 6180046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 2739788 |
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| End bp | 2741287 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641685246 |
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| Product | glycolate oxidase subunit GlcD |
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| Protein accession | YP_001812151 |
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| Protein GI | 172064500 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
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| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.187915 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.000688169 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTTTCA TCTACGACGA ACGGATCGAC GGCCCGCTGG CAACCGTCGA CCGCGACACG
CTCGTCGTCG CGCTCGCTGC GGCGGCGCCC GGCCTCGACG TGCTGCACGA GCGCGAGGCG
CTGAAGCCGT TCGAATGCGA CGGCCTCGCC GCGTACCGCA CGGTGCCGCT CGCGGTCGTG
CTGCCCGACA CGGTCGAGCA GGTGCGTGCG GTGCTGCGCG TGGCGGCCGC GCACGGCGTG
CCGGTCGTCG CGCGCGGCGC GGGCACCGGT CTGTCGGGCG GCGCGATGCC GCTCGAAAAA
GGCATCCTGC TCGTGATGGC CAAGTTCAAT CGCATTCTCG AAATCGACGC CGATGCCGGC
ATCGCGCGCG TGCAACCCGG CGTGCGCAAC CTCGCGATCT CGCAGGCCGC CGCGCCCTAC
GACCTCTACT ATGCGCCGGA CCCGTCGTCG CAGATCGCAT GCTCGATCGG CGGCAACGTC
GCCGAAAACG CGGGCGGCGT GCACTGCCTG AAATACGGGC TGACGGTGCA CAACATCCTG
AAGGTCGAGA TCCTGACGAT CGACGGCGAC TTGCTGACGC TCGGCGCCGA CGCGCTCGAC
GCACCCGGCT TCGACCTGCT CGCGCTGTTC ACCGGCTCCG AAGGCATGCT CGGCATCGTC
ACCGAAGTGA CGGTGAAGCT GCTGCCGAAG CCGCCGAGCG TGAAGGTGCT GATGGCGAGC
TTCGACGACG TCGCCGAAGC CGGCGCGGCG GTCGCGCGGA TCATCGGCGC GGGCGTGATC
CCGGGCGGGC TCGAGATGAT GGACAACCTC GCGATCCGTG CGGCCGAGGA CTTCATCCAC
GCGGGCTATC CGGTAGACGC GCAGGCGATC CTGCTGTGCG AACTCGACGG CGCGGCGACC
GATGTCGAAG AGGACGCCGA ACGCGTCGCC GCGCTGCTGC GCGACGCCGG CGCGTCGGAG
ATCCGCGTCG CACGCGACGA GGCCGAGCGG CAGCGCTTCT GGGCCGGCCG CAAGAACGCG
TTTCCGGCGG TCGGCCGCAT GTCGCCCGAC TACTACTGCA TGGACGGCAC GATCCCGCGC
CGCGAGTTGC CGCGCGTGCT CGAAGGGATC GCCGCGTTAT CCGCGCAATA CGCATTGCCG
GTCGCGAACG TGTTCCATGC GGGCGACGGC AACATGCATC CGCTGATCCT GTTCGACGCG
AACCGTCCCG GCGAACTCGA CCGCGCGGAA GCGCTCGGCG GCAAGATCCT CGAGCTGTGC
GTCGCGGTGG GCGGCAGCAT CACCGGCGAA CACGGCGTCG GGCGCGAGAA GATCAATCAG
ATGTGCGTGC AGTTCAACGC CGACGAAATC ACGTTCTTCC ACGCGGTGAA GGCCGCGTTC
GATCCGCGCC GCCTGCTCAA TCCCGGCAAG AACATCCCGA CGCTGCACCG TTGCGCCGAA
TTCGGCGCGA TGCACGTCCA TCACGGCAAG CTGCCGTTTC CCGAACTGGA GCGCTTCTGA
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| Protein sequence | MSFIYDERID GPLATVDRDT LVVALAAAAP GLDVLHEREA LKPFECDGLA AYRTVPLAVV
LPDTVEQVRA VLRVAAAHGV PVVARGAGTG LSGGAMPLEK GILLVMAKFN RILEIDADAG
IARVQPGVRN LAISQAAAPY DLYYAPDPSS QIACSIGGNV AENAGGVHCL KYGLTVHNIL
KVEILTIDGD LLTLGADALD APGFDLLALF TGSEGMLGIV TEVTVKLLPK PPSVKVLMAS
FDDVAEAGAA VARIIGAGVI PGGLEMMDNL AIRAAEDFIH AGYPVDAQAI LLCELDGAAT
DVEEDAERVA ALLRDAGASE IRVARDEAER QRFWAGRKNA FPAVGRMSPD YYCMDGTIPR
RELPRVLEGI AALSAQYALP VANVFHAGDG NMHPLILFDA NRPGELDRAE ALGGKILELC
VAVGGSITGE HGVGREKINQ MCVQFNADEI TFFHAVKAAF DPRRLLNPGK NIPTLHRCAE
FGAMHVHHGK LPFPELERF
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