| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5490 |
|---|
| Symbol | |
|---|
| ID | 6180045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2738794 |
|---|
| End bp | 2739564 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641685245 |
|---|
| Product | DNA-binding transcriptional regulator GlcC |
|---|
| Protein accession | YP_001812150 |
|---|
| Protein GI | 172064499 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.290272 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.000168771 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACGC AAGTTCGACA AGCGCCGGCG CGCAATGTCG CCGATGTCGT CGCCGAGCGG
ATCGAGCAGC TGATCGTCGA CGGCGTGCTG AAGGCCGGAC AGGCGCTGCC GTCCGAGCGG
CGGCTCACCG AGAAGCTCGG CGTGTCGCGC ACGGCCGTGC GCGAAGGGAT GAAGCTGCTG
CGTGCGCGTG GCATCATCGA CACGACGCAC GGCAAGGGTT CGTTCGTCGC GAGCCTGACC
CCGCAGCGCG AAGTGTCGCC GATGATGCAT CTGCTCGGCT CGCAGCCGCG CACGCTGTAC
GACCTGTTCG AGGTACGCGG GATGCTCGAG ACCGAAGCCG CGCGGCTCGC GGCGCTGCGC
GGTACGCCTG CCGATTTCAT CCTGATCAAG CGCCGCTACG AGGAAATGAC GGCGGCCGAT
GCGCAGGATC TCGATCCGGC GGCGCGGGCG AAGCTCGACC ATGCGTTCCA TCTCGCGATC
TGCGAGGCGT CGCACAATCC GGTGCTTGTG AATACGTTGC AGTCGCTGAC CGACTTGCTG
CTCAGTTCCG TGTTTGCGTC GGTGAACAAT CTCTATCACC GCGAGCCGTT GAAGAAGCAG
ATCGACCGCC AGCATGCGCG GCTTTATAAC GCGGTGACAG GGCGGCTGCC CGACCAGGCC
CGCAAGGCCG CGAGCGAGCA TATCCGGCAG TGCGTCGACT ATCTGCGCGA GATCGAGGAG
GAAGAGCAGC GGCTCGTGCG GTCGACGCTG CGGCTCGAAG GGTGGACGTG A
|
|---|
| Protein sequence | METQVRQAPA RNVADVVAER IEQLIVDGVL KAGQALPSER RLTEKLGVSR TAVREGMKLL
RARGIIDTTH GKGSFVASLT PQREVSPMMH LLGSQPRTLY DLFEVRGMLE TEAARLAALR
GTPADFILIK RRYEEMTAAD AQDLDPAARA KLDHAFHLAI CEASHNPVLV NTLQSLTDLL
LSSVFASVNN LYHREPLKKQ IDRQHARLYN AVTGRLPDQA RKAASEHIRQ CVDYLREIEE
EEQRLVRSTL RLEGWT
|
|---|
| |