Gene BamMC406_5486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5486 
Symbol 
ID6180438 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2733188 
End bp2735179 
Gene Length1992 bp 
Protein Length663 aa 
Translation table11 
GC content71% 
IMG OID641685241 
ProductBeta-galactosidase 
Protein accessionYP_001812146 
Protein GI172064495 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1874] Beta-galactosidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.761989 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.000330975 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGCCTCG GAGTCTGTTA CTACCCGGAA CACTGGCCGG AATCGATGTG GGCCGCCGAC 
GCCCGCCGGA TGAAGGCGCT CGGCATCGCG CAGGTGCGGA TCGCCGAATT CGCGTGGAGC
CGCATCGAGC CGTCGCCGGG CGAATACGAC TGGGGCTGGC TCGACCGCGC GGTCGACGTG
CTCGGTACGG CCGGCCTCGA GATCGTGATG TGCACGCCGA CCGCGACGCC GCCGAAATGG
CTCGTCGACC GTCACCCCGA CATCCTCGCA ATCGGCGCCG ATGGCCGGCC GCGCGGGTTC
GGTTCGCGCC GCCACTACGA CTTCTCGTCG CCGACCTATC TGGAAGCGTC CCGCCAGATC
TGCACGGCGG TCGCCGAACG CTACGGCCGC CACCCGGCCG TGCGCTACTG GCAGACCGAC
AACGAGCTCG GCTGCCACCA GACGGTGGTC AGCTATTCGC CCGCCGCGCT CGTGCGCTTT
CGCGAATGGC TGAAGGCCCG CTACGGCACG ATCGACGCGC TGAACCGCGC GTGGGGCACC
GTGTTCTGGA GCATGGAGTA CCGGCATTTC GACGAAGTCG ACGCGCCCAT CGGCACCGTG
ACCGAAGCGC ATCCGTCGCA TCGCCTCGAC TACCGGCGCT TCGCGTCCGA CGAGGTCGCG
CGCTATCACC GGATGCAGGT CGACGTGATC CGCGCGCATT CGCCGGGCCG GCCCGTCGCG
CACAACTTCA TGCAGCTGTT CACCGAGTTC GATCATTACG AGGTGGCGCG CGACCTCGAC
ATCGCGACGT GGGACAGCTA CCCGCTCGGC GCGCTCGAGG AGCAATGGTT CGCACCCGAG
CTGAAGGCGC GCTGGCTGCG CACCGGCCAT CCGGATTTCG CGTCGTTCAA TCACGATCTC
TATCGCGGGA TGTCGAAGCT GCCGTTCTGG GTGATGGAGC AGCAGCCGGG GCCCGTGAAC
TGGGCGCAGT GGAACCCCGC GCCGCTGCCG GGCATGGTGC GCCTGTGGAG CTGGGAAGCG
TTCGCGCACG GCGCCGGCTG CGTGTCGTAC TTCCGCTGGC GGCAGGCGCC GTTCGCGCAG
GAGCAGATGC ATGCGGGCCT GCACACGCCG GACGACCAGC TCGACGAAGG CGGCCGCGAA
GCGCAGCGCG TCGCGCGCGA AATCGCGGCC GTGCTCGACG CCGGCGCCGA TGCCGACGCG
AACGGCGCGG TGCGCGCCCC CGTCGCGCTG GTGTTCGACT ATGAAGCGAA GTGGCTGTTC
GAAGTGCAGC CGCAAGGCGC CGATTTCCAC TACCCGCGCT GCGCGTTCGA GTACTACTCG
GCGCTGCGTT CGCTCGGCCT CGACGTCGAC GTGATCTCCG CGCATGCGCC GCTCGACGGC
TACCGGCTCG TCGTCGTGCC GCCGCTGCCG ATCGTGCCGG ACGACTTCGC GGCCCGGCTC
GCCGCATCGG GCGCTCATGC GGTGTTCGGC CCGCGCACCG GTTCGAAGAC GGCCGACCTG
CAGATTCCGC CGACGCTGCC GCCCGGCCCG CTCGCGTCGA TCCTGCCGCT GCGCGTGTGG
CGCGTCGAGT CGCTGCGGCC GAACGTGACC GAGCCGGTCG ACGGAACGTT GCGCGACGGC
TCGGCGTTCA CCGGCGACGC ACGCCGCTGG CGCGACCTCG TCGAGCTGCG CGACGATGCA
CCCAGCGTCG TGCGTGCGCG CTTCGCCGAC GGTCATCCGG CCTGCGTGTC GCACGGCGCG
CTGCACTACT GGGCCGCGCT GTTCGATGAC GCGACCACCG CGCGCCTGTT CGCCGACGTC
GCGGCCGAAG CCGGCCTGAC ACCGTCGCCG CTCGGCGACG GCGTGCGCGT GAGCCGACGC
GGCGGCCTGA CCTACGTATT CAACTACGGC GGCACGCCGC ATACGGTCGA TGGGGTGCCG
CCGTCCGCGT TCGTGGTCGG CGCCGCGCAG GTCGAGCCGC AAGGCGTCGC CGTGTATCGA
AGCCGTTCGT AG
 
Protein sequence
MRLGVCYYPE HWPESMWAAD ARRMKALGIA QVRIAEFAWS RIEPSPGEYD WGWLDRAVDV 
LGTAGLEIVM CTPTATPPKW LVDRHPDILA IGADGRPRGF GSRRHYDFSS PTYLEASRQI
CTAVAERYGR HPAVRYWQTD NELGCHQTVV SYSPAALVRF REWLKARYGT IDALNRAWGT
VFWSMEYRHF DEVDAPIGTV TEAHPSHRLD YRRFASDEVA RYHRMQVDVI RAHSPGRPVA
HNFMQLFTEF DHYEVARDLD IATWDSYPLG ALEEQWFAPE LKARWLRTGH PDFASFNHDL
YRGMSKLPFW VMEQQPGPVN WAQWNPAPLP GMVRLWSWEA FAHGAGCVSY FRWRQAPFAQ
EQMHAGLHTP DDQLDEGGRE AQRVAREIAA VLDAGADADA NGAVRAPVAL VFDYEAKWLF
EVQPQGADFH YPRCAFEYYS ALRSLGLDVD VISAHAPLDG YRLVVVPPLP IVPDDFAARL
AASGAHAVFG PRTGSKTADL QIPPTLPPGP LASILPLRVW RVESLRPNVT EPVDGTLRDG
SAFTGDARRW RDLVELRDDA PSVVRARFAD GHPACVSHGA LHYWAALFDD ATTARLFADV
AAEAGLTPSP LGDGVRVSRR GGLTYVFNYG GTPHTVDGVP PSAFVVGAAQ VEPQGVAVYR
SRS