Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5486 |
Symbol | |
ID | 6180438 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 2733188 |
End bp | 2735179 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 641685241 |
Product | Beta-galactosidase |
Protein accession | YP_001812146 |
Protein GI | 172064495 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1874] Beta-galactosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.761989 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.000330975 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCGCCTCG GAGTCTGTTA CTACCCGGAA CACTGGCCGG AATCGATGTG GGCCGCCGAC GCCCGCCGGA TGAAGGCGCT CGGCATCGCG CAGGTGCGGA TCGCCGAATT CGCGTGGAGC CGCATCGAGC CGTCGCCGGG CGAATACGAC TGGGGCTGGC TCGACCGCGC GGTCGACGTG CTCGGTACGG CCGGCCTCGA GATCGTGATG TGCACGCCGA CCGCGACGCC GCCGAAATGG CTCGTCGACC GTCACCCCGA CATCCTCGCA ATCGGCGCCG ATGGCCGGCC GCGCGGGTTC GGTTCGCGCC GCCACTACGA CTTCTCGTCG CCGACCTATC TGGAAGCGTC CCGCCAGATC TGCACGGCGG TCGCCGAACG CTACGGCCGC CACCCGGCCG TGCGCTACTG GCAGACCGAC AACGAGCTCG GCTGCCACCA GACGGTGGTC AGCTATTCGC CCGCCGCGCT CGTGCGCTTT CGCGAATGGC TGAAGGCCCG CTACGGCACG ATCGACGCGC TGAACCGCGC GTGGGGCACC GTGTTCTGGA GCATGGAGTA CCGGCATTTC GACGAAGTCG ACGCGCCCAT CGGCACCGTG ACCGAAGCGC ATCCGTCGCA TCGCCTCGAC TACCGGCGCT TCGCGTCCGA CGAGGTCGCG CGCTATCACC GGATGCAGGT CGACGTGATC CGCGCGCATT CGCCGGGCCG GCCCGTCGCG CACAACTTCA TGCAGCTGTT CACCGAGTTC GATCATTACG AGGTGGCGCG CGACCTCGAC ATCGCGACGT GGGACAGCTA CCCGCTCGGC GCGCTCGAGG AGCAATGGTT CGCACCCGAG CTGAAGGCGC GCTGGCTGCG CACCGGCCAT CCGGATTTCG CGTCGTTCAA TCACGATCTC TATCGCGGGA TGTCGAAGCT GCCGTTCTGG GTGATGGAGC AGCAGCCGGG GCCCGTGAAC TGGGCGCAGT GGAACCCCGC GCCGCTGCCG GGCATGGTGC GCCTGTGGAG CTGGGAAGCG TTCGCGCACG GCGCCGGCTG CGTGTCGTAC TTCCGCTGGC GGCAGGCGCC GTTCGCGCAG GAGCAGATGC ATGCGGGCCT GCACACGCCG GACGACCAGC TCGACGAAGG CGGCCGCGAA GCGCAGCGCG TCGCGCGCGA AATCGCGGCC GTGCTCGACG CCGGCGCCGA TGCCGACGCG AACGGCGCGG TGCGCGCCCC CGTCGCGCTG GTGTTCGACT ATGAAGCGAA GTGGCTGTTC GAAGTGCAGC CGCAAGGCGC CGATTTCCAC TACCCGCGCT GCGCGTTCGA GTACTACTCG GCGCTGCGTT CGCTCGGCCT CGACGTCGAC GTGATCTCCG CGCATGCGCC GCTCGACGGC TACCGGCTCG TCGTCGTGCC GCCGCTGCCG ATCGTGCCGG ACGACTTCGC GGCCCGGCTC GCCGCATCGG GCGCTCATGC GGTGTTCGGC CCGCGCACCG GTTCGAAGAC GGCCGACCTG CAGATTCCGC CGACGCTGCC GCCCGGCCCG CTCGCGTCGA TCCTGCCGCT GCGCGTGTGG CGCGTCGAGT CGCTGCGGCC GAACGTGACC GAGCCGGTCG ACGGAACGTT GCGCGACGGC TCGGCGTTCA CCGGCGACGC ACGCCGCTGG CGCGACCTCG TCGAGCTGCG CGACGATGCA CCCAGCGTCG TGCGTGCGCG CTTCGCCGAC GGTCATCCGG CCTGCGTGTC GCACGGCGCG CTGCACTACT GGGCCGCGCT GTTCGATGAC GCGACCACCG CGCGCCTGTT CGCCGACGTC GCGGCCGAAG CCGGCCTGAC ACCGTCGCCG CTCGGCGACG GCGTGCGCGT GAGCCGACGC GGCGGCCTGA CCTACGTATT CAACTACGGC GGCACGCCGC ATACGGTCGA TGGGGTGCCG CCGTCCGCGT TCGTGGTCGG CGCCGCGCAG GTCGAGCCGC AAGGCGTCGC CGTGTATCGA AGCCGTTCGT AG
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Protein sequence | MRLGVCYYPE HWPESMWAAD ARRMKALGIA QVRIAEFAWS RIEPSPGEYD WGWLDRAVDV LGTAGLEIVM CTPTATPPKW LVDRHPDILA IGADGRPRGF GSRRHYDFSS PTYLEASRQI CTAVAERYGR HPAVRYWQTD NELGCHQTVV SYSPAALVRF REWLKARYGT IDALNRAWGT VFWSMEYRHF DEVDAPIGTV TEAHPSHRLD YRRFASDEVA RYHRMQVDVI RAHSPGRPVA HNFMQLFTEF DHYEVARDLD IATWDSYPLG ALEEQWFAPE LKARWLRTGH PDFASFNHDL YRGMSKLPFW VMEQQPGPVN WAQWNPAPLP GMVRLWSWEA FAHGAGCVSY FRWRQAPFAQ EQMHAGLHTP DDQLDEGGRE AQRVAREIAA VLDAGADADA NGAVRAPVAL VFDYEAKWLF EVQPQGADFH YPRCAFEYYS ALRSLGLDVD VISAHAPLDG YRLVVVPPLP IVPDDFAARL AASGAHAVFG PRTGSKTADL QIPPTLPPGP LASILPLRVW RVESLRPNVT EPVDGTLRDG SAFTGDARRW RDLVELRDDA PSVVRARFAD GHPACVSHGA LHYWAALFDD ATTARLFADV AAEAGLTPSP LGDGVRVSRR GGLTYVFNYG GTPHTVDGVP PSAFVVGAAQ VEPQGVAVYR SRS
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