| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5478 |
|---|
| Symbol | |
|---|
| ID | 6181117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2722327 |
|---|
| End bp | 2723256 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641685233 |
|---|
| Product | dihydrodipicolinate synthetase |
|---|
| Protein accession | YP_001812138 |
|---|
| Protein GI | 172064487 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0261225 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCGA GCAGCACACC GCGCTACCGC GGCATCTTCC CCGTCGTCCC GACGACGTTT
TCCGAGACCG GCGAGCTCGA CCTCGCGAGC CAGAAGCGCG CGGTCGATTT CATGATCGAC
GCGGGCTCGG ACGGGCTGTG CATCCTCGCG AACTTCTCCG AGCAATTCGC GATCACCGAC
GACGAACGCG ACGTGCTCAC GCGCACGATC CTCGAACACG TCGCCGGCCG CGTGCCGGTG
ATCGTCACGA CGTCGCACTA CAGCACGCAG GTATGCGCGG CGCGCAGCCT GCGCGCGCAG
CAGCTCGGCG CGGCGATGGT GATGACGATG CCGCCGTATC ACGGCGCGAC GTTCCGCGTG
CCCGAAGCGC AGATCATCGA CTTCTATGCG CGCGTGTCGG ATGCGATCGA CATCCCGATC
ATGATCCAGG ATGCGCCCGC GAGCGGCACC GCGCTGTCCG CGCCGTTGCT GGCGCGGATG
GCGCGCGAGA TCGAGCAGGT CTCGTACTTC AAGATCGAGA CGCCCGGCGC CGCGAACAAG
CTGCGCGAGC TGATCCGGCT CGGCGGCGAC GCGATCGAAG GGCCGTGGGA CGGCGAGGAG
GCGATCACGC TGCTCGCCGA CCTGCATGCC GGCGCGACCG GCGCGATGAC GGGCGGCGCA
TATCCGGACG GCATCCGGCC GATCCTCGAG GCGTGGCGCG AAGGGCGGCA GGACGATGCG
TACGCGCGCT ACCAGGCGTG GCTGCCGCTG ATCAATCACG AGAACCGCCA GTCCGGCATT
CTCACCGCGA AGGCGCTGAT GCGCGAAGGC GGTGTGATCG CGTGCGAGCG GCCGCGGCAT
CCGATGCCGG AACTGCATCC GGACACGCAC GCGGAGCTGC TTACGATCGC GCGCCGGCTT
GATCCGCTCG TGCTGCGCTG GGCGCACTGA
|
|---|
| Protein sequence | MTSSSTPRYR GIFPVVPTTF SETGELDLAS QKRAVDFMID AGSDGLCILA NFSEQFAITD
DERDVLTRTI LEHVAGRVPV IVTTSHYSTQ VCAARSLRAQ QLGAAMVMTM PPYHGATFRV
PEAQIIDFYA RVSDAIDIPI MIQDAPASGT ALSAPLLARM AREIEQVSYF KIETPGAANK
LRELIRLGGD AIEGPWDGEE AITLLADLHA GATGAMTGGA YPDGIRPILE AWREGRQDDA
YARYQAWLPL INHENRQSGI LTAKALMREG GVIACERPRH PMPELHPDTH AELLTIARRL
DPLVLRWAH
|
|---|
| |