Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5469 |
Symbol | |
ID | 6180679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 2710560 |
End bp | 2714414 |
Gene Length | 3855 bp |
Protein Length | 1284 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641685224 |
Product | type VI secretion system Vgr family protein |
Protein accession | YP_001812129 |
Protein GI | 172064478 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.387829 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.0913862 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGATTT TTGCTCAGGA CCGCACGCTT TCGATCGCCG GCGCATCGTT GCCGACCTGG GGGATGGACG CACTACCGGT CTTCGCTCCA GTCCGCTTGC AAGGCACCGA AACCATTGGC TGTCTCGATG CATGCCGCTA CCTCGTCACG CTCCGAACCG ACGACGCCTA TGCGTTCTCT CCCAGTCACG CGGCCGATGT CGATCTGGAC AAGATCGTCG GCACGGAAGT GACGGTGTCG ATCCAGCTCG AAGGCAGAGG GCGGCTCATT CCGGAGCTGG CCGGCCCGGC TGGACACGAC AACACGGGCG CCGGAACGCG CGAGATCAGC GGATTGGTCG AAGCGGCACG ACTGGCCGGA CAGGATCGCG ATGCGATTCT GTACGAACTG GAGCTGCGCC CGTGGCTCTA TCGCGCGGCG CTGACGCAGG ATTGCCGTCT GTTCCAGGAC ATGACCGTCG TCGACGTCAC CGACGTGGTA CTCGCGAAAT ATCCGTATCC CGTCGACAAG CGCCTGGGCG CATTCCGGGG CGCCTATCCG ACACGCGACG TGCAGCGGCA GGCGTTCGAA TCGGATTGGG CATTCCTGCA ACGCCTCTGG GAAGAATGGG GAATCTGGTG GTGGTTCGAA CACGACGGCG GTCGTCATCG TCTGGTCTTG TGTGACTCCA TGGGCGGTCA TCGGCCCCAT CGTGCCGCTT ACGCGACGTT GCGCTATCGA CCGCCCGGCG CGCAGCGCAT CGACGAGGAA CACATCCACA CGCTGTCCGT GACCAGCCGT CTGACGCCGG GCGGCGTGAG CGTGACAGAC TACGACTACA CGCGCCCGCG GGCGGATCTG GCCGCGACGG TGGAAGACCC TCGCCCGAGC GCAAGCGCCG ACGGCGAGAT CTACGGCTGG GGCGATTACA GTCAGCCGCT CGCGGGCGCG TCAGGGCTGA CGGGTCAACC GAACGATACG GAGCGCGAGG CGCGGCACTT CGCGCGCGTG CAGCTGGAGG CGCAGCGTTG CAAGGGGCTG CGCGCAAACG GGCAAGGGAA CCTGCGCGGC CTCGCGGTCG GGCATACCTT TACATTGACC GGCTATCCGC AGCAGGCGGC AAATCGCGAG TACCTCGTCG TATCGTGCAC GCTCGATATC GAGGCCGTCG CGCAGCGCAC CAGTGACGAG CAGGCCTGTC GCGTCGATGC GCAATTCGAA CTGTTGCCGA CGAACGAGCC GTTCCGGTTG GCGCGCAGTG TCCGTAAGCC GATCCTGAGC GGGCCCGAGC AAGCGACCGT CGTCGGTCCG GCCGGACAGG AAGTCTGGAC GGACCGATAC GGCCGCGTAA AGGTGCAATT CGCGTGGGAC CGGCAGGGCA CGCACGACGA GCATTCCGGT ATCTGGCTGC GCGTGCTGTC GCCGTGGCAA GGCATGGACG TGGGGGCGAC GTTCGTCCCG CGCATCGGTC ATGAGGTCGC GGTGTCGCAC TACCATGGCG ACCCCGATTT GCCGGTGATT ATCGGCAGCG CGGTCAACGC ATTCCGACAG CCTGCGCTCG ATCTGCCGCA CAACCATGCG ATGTCCGTGA TCCGGGGACG GGAATTTCAC GGTACCGCAT CCGGTCATCT CGCGATCGAC GACACGCAGG AACAAATCCA GACGCAGATC GCGAGCGATG CCGGCGCATC TGTGCTGAGC TTGGGCAACC TTCGCCGTAT CACGCGCAAG AACGGGCGTG CGGATGCACG CGGCAAGGGC TTCGATCTTC GCACCGACGA TTGGGGCGTG GTGCGTGCGT TGAAGGGCTT GCTGGTGTCG ACCGACGGCC AACCGGGCGG CCCCGGTCAC GCGAAGGCCG CCAAAGAGGC TGTCAGCCGG CTGACGCAGG CGCGCGATCT GCAGAAAAGC CTGACGGATC TGGCGCAACG GCACGACGCG CAACCACCGG GCGCCGATCA GAGCGACGTC CCTCGGGCGA TCAACGCGCG TAACGAAGCG ATTCGGGGCA CGCCGTCCGG TGGCGCGGAC CACTTTCCGG AACTGGCCGA ACCCGACATC GTACTGACCG CTTCGGCCGG AATCAGCATG GCGGCCGAGC GGAGCACGCA TATCGCAAGC AGCGAGGATG TGGCGGTGAC GAGCGGCCGG CATGTCGGTA TCGCGGTGGG GCGTTCGTTG TTTGCGAGCG TGTCGAATGC GTTTTCGCTG TTCGTGCACA AGGCGGGCAT GGCGCTCGTC GCCGCTGCGG GGAAAGTGCG GATCGACGCG CAGACCGATG GCGTCGACGT CACCGCCAGG AAGGCAATCC GGCTCACGAG CACGGCTGAC ACCATTCATT TGCATGCGGC CAAGGAAATC GTGCTGCACG CCGGCAGGAC GGAGGTACGC ATCAGCGATC GGGGATATGT GGTGCGAACA GCAGGCGAGC ATACGATCCA TGCTGGCAGT CATCAGACCG ATCATGCACA GGTGCGACCG ATGCACGTGC CGGTCACGCC GGAACACCCC GGGCGATACG CCGCGCAGTT TGTGCTGCTG GAGCACGGCA GCGGATTTGC TCTGCCGAAC CAGCCGTACC GGATCACGCT GGACAACGGA CGCGTGGTCG ACGGGGTGAG CAACGAACTG GGCGAAACGG ACGTGGTGAC GAGCCATGAC ATCGCGTTCG GCACGGTGGA GCTGCTGGCG GCGAGCGCGA CGGACAAGGT GATTGCGGTA AACCAGGCCG CCATCGTGCG CGAGAACACG GCGCCCTACA CCGTCAGGGC GCCGAATGCC GACAAGCGCA CGGCGACGAT CAGGGGTAGG GAGGTCAGCA CCCCGGAACG GGGGGCTACG TCCGGCAGCC AGCGGCCAGC ATTCGCCGCA TGCGATCCGC TCAACTTCGG GTTGCGCTTC CATCACTTCA TCGGCGGAGC GAAACAGGGC GATACGCCGC TCGATATGCC GGTGCGCCGG GATGTCGAGT ATCCGGTGAC GAAGGCTTAT ACGGCGGCGA TCAAGAAGGC GCTCAAGGGG ATTGGGTGGG GTAGGTTCAA TACGTCGAGT GGAGAGATAT CGGATGAGGC AAAGGAAAGT ATCGCGCTTG CGGTTGGCAA TGTATTGAAT ACCGCCCTTG CGGCGGGGCC GTATGGATTG CCACGAGGTT CTTCAGGTGA CCAGATGAGG TCAAATGGCG GATTTCCCAA GTTCGATATT GTTAATGAAA AGGAAGGTCA GTCCCGATAC AACATGCGCT CGGATGTAAG TGCATCGTTT TCCACATTAA GGTGGACGAT AGTCGTTCAA GAGGCAGAAA TCAGGAAGAT CATGGCGGCG AGAAAAAATG ATGCCGCCTT GGATGGCACC CTGAAGACGC TCGCAGACAC GCTTTATCAC GAAGCGCGAC ATTGTCAGCA AACATTCTGG ATGATGGCCC TGCTTCAACA ACATTCGAGC GACTATGCGA TGTTCTCGAG TGCAATGCAC GTATACAAGA CCAACTGTCC AAAAGAGATT TTTGAGGCCG CAGCGAAAAC AAAAATTCCC GAGGATGCAC GGATTGCCAC GGGACTTCAT CGCATGTTGA TTTTCCACTA TTACTGGATG ATTTCGTACA TGCAAAATCA GCCACGCGGA GCCTATGTAA AGCCCGACGT GCCGATTGCA CAGTCCGAGG TGTGCAAGCT GTTGAGAGTA TCGCCGGAAA CGGCGGCGAA GATGGTGAGT TTCGAAGAGG GATACCGGAG CCAATTACAT GAAGAAGATG CATATGCCTG TGCGGAAGTG GTGCAAGCCT ATTGGGACCG TCCTGATCGT GCTTTCGTGC GTAACCCCGG CACATGCACA GGAGAATACG ATGCTTCACT TCACGCCATT GGGCGAGGGA TTTGA
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Protein sequence | MAIFAQDRTL SIAGASLPTW GMDALPVFAP VRLQGTETIG CLDACRYLVT LRTDDAYAFS PSHAADVDLD KIVGTEVTVS IQLEGRGRLI PELAGPAGHD NTGAGTREIS GLVEAARLAG QDRDAILYEL ELRPWLYRAA LTQDCRLFQD MTVVDVTDVV LAKYPYPVDK RLGAFRGAYP TRDVQRQAFE SDWAFLQRLW EEWGIWWWFE HDGGRHRLVL CDSMGGHRPH RAAYATLRYR PPGAQRIDEE HIHTLSVTSR LTPGGVSVTD YDYTRPRADL AATVEDPRPS ASADGEIYGW GDYSQPLAGA SGLTGQPNDT EREARHFARV QLEAQRCKGL RANGQGNLRG LAVGHTFTLT GYPQQAANRE YLVVSCTLDI EAVAQRTSDE QACRVDAQFE LLPTNEPFRL ARSVRKPILS GPEQATVVGP AGQEVWTDRY GRVKVQFAWD RQGTHDEHSG IWLRVLSPWQ GMDVGATFVP RIGHEVAVSH YHGDPDLPVI IGSAVNAFRQ PALDLPHNHA MSVIRGREFH GTASGHLAID DTQEQIQTQI ASDAGASVLS LGNLRRITRK NGRADARGKG FDLRTDDWGV VRALKGLLVS TDGQPGGPGH AKAAKEAVSR LTQARDLQKS LTDLAQRHDA QPPGADQSDV PRAINARNEA IRGTPSGGAD HFPELAEPDI VLTASAGISM AAERSTHIAS SEDVAVTSGR HVGIAVGRSL FASVSNAFSL FVHKAGMALV AAAGKVRIDA QTDGVDVTAR KAIRLTSTAD TIHLHAAKEI VLHAGRTEVR ISDRGYVVRT AGEHTIHAGS HQTDHAQVRP MHVPVTPEHP GRYAAQFVLL EHGSGFALPN QPYRITLDNG RVVDGVSNEL GETDVVTSHD IAFGTVELLA ASATDKVIAV NQAAIVRENT APYTVRAPNA DKRTATIRGR EVSTPERGAT SGSQRPAFAA CDPLNFGLRF HHFIGGAKQG DTPLDMPVRR DVEYPVTKAY TAAIKKALKG IGWGRFNTSS GEISDEAKES IALAVGNVLN TALAAGPYGL PRGSSGDQMR SNGGFPKFDI VNEKEGQSRY NMRSDVSASF STLRWTIVVQ EAEIRKIMAA RKNDAALDGT LKTLADTLYH EARHCQQTFW MMALLQQHSS DYAMFSSAMH VYKTNCPKEI FEAAAKTKIP EDARIATGLH RMLIFHYYWM ISYMQNQPRG AYVKPDVPIA QSEVCKLLRV SPETAAKMVS FEEGYRSQLH EEDAYACAEV VQAYWDRPDR AFVRNPGTCT GEYDASLHAI GRGI
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