Gene BamMC406_5469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5469 
Symbol 
ID6180679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2710560 
End bp2714414 
Gene Length3855 bp 
Protein Length1284 aa 
Translation table11 
GC content62% 
IMG OID641685224 
Producttype VI secretion system Vgr family protein 
Protein accessionYP_001812129 
Protein GI172064478 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.387829 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0913862 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGATTT TTGCTCAGGA CCGCACGCTT TCGATCGCCG GCGCATCGTT GCCGACCTGG 
GGGATGGACG CACTACCGGT CTTCGCTCCA GTCCGCTTGC AAGGCACCGA AACCATTGGC
TGTCTCGATG CATGCCGCTA CCTCGTCACG CTCCGAACCG ACGACGCCTA TGCGTTCTCT
CCCAGTCACG CGGCCGATGT CGATCTGGAC AAGATCGTCG GCACGGAAGT GACGGTGTCG
ATCCAGCTCG AAGGCAGAGG GCGGCTCATT CCGGAGCTGG CCGGCCCGGC TGGACACGAC
AACACGGGCG CCGGAACGCG CGAGATCAGC GGATTGGTCG AAGCGGCACG ACTGGCCGGA
CAGGATCGCG ATGCGATTCT GTACGAACTG GAGCTGCGCC CGTGGCTCTA TCGCGCGGCG
CTGACGCAGG ATTGCCGTCT GTTCCAGGAC ATGACCGTCG TCGACGTCAC CGACGTGGTA
CTCGCGAAAT ATCCGTATCC CGTCGACAAG CGCCTGGGCG CATTCCGGGG CGCCTATCCG
ACACGCGACG TGCAGCGGCA GGCGTTCGAA TCGGATTGGG CATTCCTGCA ACGCCTCTGG
GAAGAATGGG GAATCTGGTG GTGGTTCGAA CACGACGGCG GTCGTCATCG TCTGGTCTTG
TGTGACTCCA TGGGCGGTCA TCGGCCCCAT CGTGCCGCTT ACGCGACGTT GCGCTATCGA
CCGCCCGGCG CGCAGCGCAT CGACGAGGAA CACATCCACA CGCTGTCCGT GACCAGCCGT
CTGACGCCGG GCGGCGTGAG CGTGACAGAC TACGACTACA CGCGCCCGCG GGCGGATCTG
GCCGCGACGG TGGAAGACCC TCGCCCGAGC GCAAGCGCCG ACGGCGAGAT CTACGGCTGG
GGCGATTACA GTCAGCCGCT CGCGGGCGCG TCAGGGCTGA CGGGTCAACC GAACGATACG
GAGCGCGAGG CGCGGCACTT CGCGCGCGTG CAGCTGGAGG CGCAGCGTTG CAAGGGGCTG
CGCGCAAACG GGCAAGGGAA CCTGCGCGGC CTCGCGGTCG GGCATACCTT TACATTGACC
GGCTATCCGC AGCAGGCGGC AAATCGCGAG TACCTCGTCG TATCGTGCAC GCTCGATATC
GAGGCCGTCG CGCAGCGCAC CAGTGACGAG CAGGCCTGTC GCGTCGATGC GCAATTCGAA
CTGTTGCCGA CGAACGAGCC GTTCCGGTTG GCGCGCAGTG TCCGTAAGCC GATCCTGAGC
GGGCCCGAGC AAGCGACCGT CGTCGGTCCG GCCGGACAGG AAGTCTGGAC GGACCGATAC
GGCCGCGTAA AGGTGCAATT CGCGTGGGAC CGGCAGGGCA CGCACGACGA GCATTCCGGT
ATCTGGCTGC GCGTGCTGTC GCCGTGGCAA GGCATGGACG TGGGGGCGAC GTTCGTCCCG
CGCATCGGTC ATGAGGTCGC GGTGTCGCAC TACCATGGCG ACCCCGATTT GCCGGTGATT
ATCGGCAGCG CGGTCAACGC ATTCCGACAG CCTGCGCTCG ATCTGCCGCA CAACCATGCG
ATGTCCGTGA TCCGGGGACG GGAATTTCAC GGTACCGCAT CCGGTCATCT CGCGATCGAC
GACACGCAGG AACAAATCCA GACGCAGATC GCGAGCGATG CCGGCGCATC TGTGCTGAGC
TTGGGCAACC TTCGCCGTAT CACGCGCAAG AACGGGCGTG CGGATGCACG CGGCAAGGGC
TTCGATCTTC GCACCGACGA TTGGGGCGTG GTGCGTGCGT TGAAGGGCTT GCTGGTGTCG
ACCGACGGCC AACCGGGCGG CCCCGGTCAC GCGAAGGCCG CCAAAGAGGC TGTCAGCCGG
CTGACGCAGG CGCGCGATCT GCAGAAAAGC CTGACGGATC TGGCGCAACG GCACGACGCG
CAACCACCGG GCGCCGATCA GAGCGACGTC CCTCGGGCGA TCAACGCGCG TAACGAAGCG
ATTCGGGGCA CGCCGTCCGG TGGCGCGGAC CACTTTCCGG AACTGGCCGA ACCCGACATC
GTACTGACCG CTTCGGCCGG AATCAGCATG GCGGCCGAGC GGAGCACGCA TATCGCAAGC
AGCGAGGATG TGGCGGTGAC GAGCGGCCGG CATGTCGGTA TCGCGGTGGG GCGTTCGTTG
TTTGCGAGCG TGTCGAATGC GTTTTCGCTG TTCGTGCACA AGGCGGGCAT GGCGCTCGTC
GCCGCTGCGG GGAAAGTGCG GATCGACGCG CAGACCGATG GCGTCGACGT CACCGCCAGG
AAGGCAATCC GGCTCACGAG CACGGCTGAC ACCATTCATT TGCATGCGGC CAAGGAAATC
GTGCTGCACG CCGGCAGGAC GGAGGTACGC ATCAGCGATC GGGGATATGT GGTGCGAACA
GCAGGCGAGC ATACGATCCA TGCTGGCAGT CATCAGACCG ATCATGCACA GGTGCGACCG
ATGCACGTGC CGGTCACGCC GGAACACCCC GGGCGATACG CCGCGCAGTT TGTGCTGCTG
GAGCACGGCA GCGGATTTGC TCTGCCGAAC CAGCCGTACC GGATCACGCT GGACAACGGA
CGCGTGGTCG ACGGGGTGAG CAACGAACTG GGCGAAACGG ACGTGGTGAC GAGCCATGAC
ATCGCGTTCG GCACGGTGGA GCTGCTGGCG GCGAGCGCGA CGGACAAGGT GATTGCGGTA
AACCAGGCCG CCATCGTGCG CGAGAACACG GCGCCCTACA CCGTCAGGGC GCCGAATGCC
GACAAGCGCA CGGCGACGAT CAGGGGTAGG GAGGTCAGCA CCCCGGAACG GGGGGCTACG
TCCGGCAGCC AGCGGCCAGC ATTCGCCGCA TGCGATCCGC TCAACTTCGG GTTGCGCTTC
CATCACTTCA TCGGCGGAGC GAAACAGGGC GATACGCCGC TCGATATGCC GGTGCGCCGG
GATGTCGAGT ATCCGGTGAC GAAGGCTTAT ACGGCGGCGA TCAAGAAGGC GCTCAAGGGG
ATTGGGTGGG GTAGGTTCAA TACGTCGAGT GGAGAGATAT CGGATGAGGC AAAGGAAAGT
ATCGCGCTTG CGGTTGGCAA TGTATTGAAT ACCGCCCTTG CGGCGGGGCC GTATGGATTG
CCACGAGGTT CTTCAGGTGA CCAGATGAGG TCAAATGGCG GATTTCCCAA GTTCGATATT
GTTAATGAAA AGGAAGGTCA GTCCCGATAC AACATGCGCT CGGATGTAAG TGCATCGTTT
TCCACATTAA GGTGGACGAT AGTCGTTCAA GAGGCAGAAA TCAGGAAGAT CATGGCGGCG
AGAAAAAATG ATGCCGCCTT GGATGGCACC CTGAAGACGC TCGCAGACAC GCTTTATCAC
GAAGCGCGAC ATTGTCAGCA AACATTCTGG ATGATGGCCC TGCTTCAACA ACATTCGAGC
GACTATGCGA TGTTCTCGAG TGCAATGCAC GTATACAAGA CCAACTGTCC AAAAGAGATT
TTTGAGGCCG CAGCGAAAAC AAAAATTCCC GAGGATGCAC GGATTGCCAC GGGACTTCAT
CGCATGTTGA TTTTCCACTA TTACTGGATG ATTTCGTACA TGCAAAATCA GCCACGCGGA
GCCTATGTAA AGCCCGACGT GCCGATTGCA CAGTCCGAGG TGTGCAAGCT GTTGAGAGTA
TCGCCGGAAA CGGCGGCGAA GATGGTGAGT TTCGAAGAGG GATACCGGAG CCAATTACAT
GAAGAAGATG CATATGCCTG TGCGGAAGTG GTGCAAGCCT ATTGGGACCG TCCTGATCGT
GCTTTCGTGC GTAACCCCGG CACATGCACA GGAGAATACG ATGCTTCACT TCACGCCATT
GGGCGAGGGA TTTGA
 
Protein sequence
MAIFAQDRTL SIAGASLPTW GMDALPVFAP VRLQGTETIG CLDACRYLVT LRTDDAYAFS 
PSHAADVDLD KIVGTEVTVS IQLEGRGRLI PELAGPAGHD NTGAGTREIS GLVEAARLAG
QDRDAILYEL ELRPWLYRAA LTQDCRLFQD MTVVDVTDVV LAKYPYPVDK RLGAFRGAYP
TRDVQRQAFE SDWAFLQRLW EEWGIWWWFE HDGGRHRLVL CDSMGGHRPH RAAYATLRYR
PPGAQRIDEE HIHTLSVTSR LTPGGVSVTD YDYTRPRADL AATVEDPRPS ASADGEIYGW
GDYSQPLAGA SGLTGQPNDT EREARHFARV QLEAQRCKGL RANGQGNLRG LAVGHTFTLT
GYPQQAANRE YLVVSCTLDI EAVAQRTSDE QACRVDAQFE LLPTNEPFRL ARSVRKPILS
GPEQATVVGP AGQEVWTDRY GRVKVQFAWD RQGTHDEHSG IWLRVLSPWQ GMDVGATFVP
RIGHEVAVSH YHGDPDLPVI IGSAVNAFRQ PALDLPHNHA MSVIRGREFH GTASGHLAID
DTQEQIQTQI ASDAGASVLS LGNLRRITRK NGRADARGKG FDLRTDDWGV VRALKGLLVS
TDGQPGGPGH AKAAKEAVSR LTQARDLQKS LTDLAQRHDA QPPGADQSDV PRAINARNEA
IRGTPSGGAD HFPELAEPDI VLTASAGISM AAERSTHIAS SEDVAVTSGR HVGIAVGRSL
FASVSNAFSL FVHKAGMALV AAAGKVRIDA QTDGVDVTAR KAIRLTSTAD TIHLHAAKEI
VLHAGRTEVR ISDRGYVVRT AGEHTIHAGS HQTDHAQVRP MHVPVTPEHP GRYAAQFVLL
EHGSGFALPN QPYRITLDNG RVVDGVSNEL GETDVVTSHD IAFGTVELLA ASATDKVIAV
NQAAIVRENT APYTVRAPNA DKRTATIRGR EVSTPERGAT SGSQRPAFAA CDPLNFGLRF
HHFIGGAKQG DTPLDMPVRR DVEYPVTKAY TAAIKKALKG IGWGRFNTSS GEISDEAKES
IALAVGNVLN TALAAGPYGL PRGSSGDQMR SNGGFPKFDI VNEKEGQSRY NMRSDVSASF
STLRWTIVVQ EAEIRKIMAA RKNDAALDGT LKTLADTLYH EARHCQQTFW MMALLQQHSS
DYAMFSSAMH VYKTNCPKEI FEAAAKTKIP EDARIATGLH RMLIFHYYWM ISYMQNQPRG
AYVKPDVPIA QSEVCKLLRV SPETAAKMVS FEEGYRSQLH EEDAYACAEV VQAYWDRPDR
AFVRNPGTCT GEYDASLHAI GRGI