Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5400 |
Symbol | |
ID | 6180178 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 2638684 |
End bp | 2640216 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641685155 |
Product | putative sigma54 specific transcriptional regulator |
Protein accession | YP_001812060 |
Protein GI | 172064409 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.397817 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGAACG ACTGGGTCCG CCTGCCCGTC AATTACGGCG ACGTGCTGCG GCGCGCCGCC GAGTCGCTGT TTCGTACGTT CGAGGATTCG AGTGCGGGCA CGGTGGTCGT CGATCGCGAC GCGCGCGTCG TGTGGATGAA CGAGCGTTAT GCGGCACGTT TCGGATTCGC CGATCCGCAG CAGGCGGTCG GCCTCGACTG CGAGGCGGTG ATTCCGAACA GCCTGATGCG CGAGGTCGTG TCGAGCGGAC AACCCATCCT GCTCGACATC ATGGAGACGG GCCGCGAGCC GCTCGTCGTC ACGCGCCTGC CGTTGAAGAA CGAGGCGGGC GAGACGGTCG GCGCGATCGG CTTCGCGCTG TTCGACCAGT TGAAGACGCT CACGCCGATC TTTTCCCGCT ACGCGCAGCT TCAGCAGCAG CTGATCGCGA CGCAGCGGTC GCTCGCGCAG GCGCGCCGAG CGAAATACAC GTTCGCGAGC TTCGTCGGCA CGAGCGCCGC GAGCCTCGAA ACCAAGCGGC AGGCGCGGCG CGCGGCGCAG GTCGATTCGC CGGTGCTGCT GCTCGGCGAG ACGGGCACCG GCAAGGAACT GCTCGCGCAT GCGATCCACG CGGCGTCGGC GCGCGCGCTC CAGCCGCTCG TGACCGTCAA CGTCGCGGCG ATTCCCGACA CGCTGCTCGA AACCGAATTC TTCGGCGCGG CGCCGGGTGC GTATACCGGC GCAGACCGAA AGGGGCGCGT CGGCAAGTTC GAGCTGGCCG ATCGCGGCAC GCTGTTTCTC GACGAGATCG GCGACATGCC GCTGCCGCTG CAAGGCAAGC TGCTGCGTGT GTTGCAGGAC AAGGAGTTCG AGCCGGTCGG CTCGAACCGG ATCGTGCGCG CGGATGTACG GATCATCGCC GCGACATCGG CCGACCTGCC CGCGCTGGTC GAGGCCGGGC GCTTTCGCGC GGATCTCTAT TACCGGCTCA ACGTGTTGAC GATTCACGCG CCGCCGCTGC GCGAGCGCGC GTCCGACATC GCGGCGCTCG TCTACGCGAC GCTGGAAGAA CTGGCCGCAC AGCACGGCCG CGCCGCACAC TGCGAACTGA CCGACGATGC GCTGCGGGTG CTGTGCGCGT ATCCGTGGCC GGGCAATGTG CGCGAGCTGC GCAACACGCT CGAGCGTGCG CTGATGCTGT CGGATCGCTC GGTGATCGAC GCGCGTGCGC TCGCGCCGTT CCTCGGACCG GTGCGCGTGG CGCCCGACAG CGTGCCGGCG GGCACGCGGG TCGCGCCGTC GCCGGCCGGC CGGGATACCG GCGACGCATC GGCTTCGCCC GGTGCGCCGG TCGTTTCGTA TACCGATGCA TTGGCCGCGT GGGAGCGCCA GTTCCTGATC GATGCGCTGG CCGCTTGCGA CGGCAAGGTG GTGGAAGCGG CCGCGCGGAT CGGCATCGGT CGGGCGACGC TCTACAAGAA ACTGGCGGCG CTGGGAATCG ACCGATGGCA CGCGGCGGCG GATGCGCGCG GACATGATGA GCGGCACCGG TGA
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Protein sequence | MMNDWVRLPV NYGDVLRRAA ESLFRTFEDS SAGTVVVDRD ARVVWMNERY AARFGFADPQ QAVGLDCEAV IPNSLMREVV SSGQPILLDI METGREPLVV TRLPLKNEAG ETVGAIGFAL FDQLKTLTPI FSRYAQLQQQ LIATQRSLAQ ARRAKYTFAS FVGTSAASLE TKRQARRAAQ VDSPVLLLGE TGTGKELLAH AIHAASARAL QPLVTVNVAA IPDTLLETEF FGAAPGAYTG ADRKGRVGKF ELADRGTLFL DEIGDMPLPL QGKLLRVLQD KEFEPVGSNR IVRADVRIIA ATSADLPALV EAGRFRADLY YRLNVLTIHA PPLRERASDI AALVYATLEE LAAQHGRAAH CELTDDALRV LCAYPWPGNV RELRNTLERA LMLSDRSVID ARALAPFLGP VRVAPDSVPA GTRVAPSPAG RDTGDASASP GAPVVSYTDA LAAWERQFLI DALAACDGKV VEAAARIGIG RATLYKKLAA LGIDRWHAAA DARGHDERHR
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