Gene BamMC406_5400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5400 
Symbol 
ID6180178 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2638684 
End bp2640216 
Gene Length1533 bp 
Protein Length510 aa 
Translation table11 
GC content69% 
IMG OID641685155 
Productputative sigma54 specific transcriptional regulator 
Protein accessionYP_001812060 
Protein GI172064409 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.397817 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAACG ACTGGGTCCG CCTGCCCGTC AATTACGGCG ACGTGCTGCG GCGCGCCGCC 
GAGTCGCTGT TTCGTACGTT CGAGGATTCG AGTGCGGGCA CGGTGGTCGT CGATCGCGAC
GCGCGCGTCG TGTGGATGAA CGAGCGTTAT GCGGCACGTT TCGGATTCGC CGATCCGCAG
CAGGCGGTCG GCCTCGACTG CGAGGCGGTG ATTCCGAACA GCCTGATGCG CGAGGTCGTG
TCGAGCGGAC AACCCATCCT GCTCGACATC ATGGAGACGG GCCGCGAGCC GCTCGTCGTC
ACGCGCCTGC CGTTGAAGAA CGAGGCGGGC GAGACGGTCG GCGCGATCGG CTTCGCGCTG
TTCGACCAGT TGAAGACGCT CACGCCGATC TTTTCCCGCT ACGCGCAGCT TCAGCAGCAG
CTGATCGCGA CGCAGCGGTC GCTCGCGCAG GCGCGCCGAG CGAAATACAC GTTCGCGAGC
TTCGTCGGCA CGAGCGCCGC GAGCCTCGAA ACCAAGCGGC AGGCGCGGCG CGCGGCGCAG
GTCGATTCGC CGGTGCTGCT GCTCGGCGAG ACGGGCACCG GCAAGGAACT GCTCGCGCAT
GCGATCCACG CGGCGTCGGC GCGCGCGCTC CAGCCGCTCG TGACCGTCAA CGTCGCGGCG
ATTCCCGACA CGCTGCTCGA AACCGAATTC TTCGGCGCGG CGCCGGGTGC GTATACCGGC
GCAGACCGAA AGGGGCGCGT CGGCAAGTTC GAGCTGGCCG ATCGCGGCAC GCTGTTTCTC
GACGAGATCG GCGACATGCC GCTGCCGCTG CAAGGCAAGC TGCTGCGTGT GTTGCAGGAC
AAGGAGTTCG AGCCGGTCGG CTCGAACCGG ATCGTGCGCG CGGATGTACG GATCATCGCC
GCGACATCGG CCGACCTGCC CGCGCTGGTC GAGGCCGGGC GCTTTCGCGC GGATCTCTAT
TACCGGCTCA ACGTGTTGAC GATTCACGCG CCGCCGCTGC GCGAGCGCGC GTCCGACATC
GCGGCGCTCG TCTACGCGAC GCTGGAAGAA CTGGCCGCAC AGCACGGCCG CGCCGCACAC
TGCGAACTGA CCGACGATGC GCTGCGGGTG CTGTGCGCGT ATCCGTGGCC GGGCAATGTG
CGCGAGCTGC GCAACACGCT CGAGCGTGCG CTGATGCTGT CGGATCGCTC GGTGATCGAC
GCGCGTGCGC TCGCGCCGTT CCTCGGACCG GTGCGCGTGG CGCCCGACAG CGTGCCGGCG
GGCACGCGGG TCGCGCCGTC GCCGGCCGGC CGGGATACCG GCGACGCATC GGCTTCGCCC
GGTGCGCCGG TCGTTTCGTA TACCGATGCA TTGGCCGCGT GGGAGCGCCA GTTCCTGATC
GATGCGCTGG CCGCTTGCGA CGGCAAGGTG GTGGAAGCGG CCGCGCGGAT CGGCATCGGT
CGGGCGACGC TCTACAAGAA ACTGGCGGCG CTGGGAATCG ACCGATGGCA CGCGGCGGCG
GATGCGCGCG GACATGATGA GCGGCACCGG TGA
 
Protein sequence
MMNDWVRLPV NYGDVLRRAA ESLFRTFEDS SAGTVVVDRD ARVVWMNERY AARFGFADPQ 
QAVGLDCEAV IPNSLMREVV SSGQPILLDI METGREPLVV TRLPLKNEAG ETVGAIGFAL
FDQLKTLTPI FSRYAQLQQQ LIATQRSLAQ ARRAKYTFAS FVGTSAASLE TKRQARRAAQ
VDSPVLLLGE TGTGKELLAH AIHAASARAL QPLVTVNVAA IPDTLLETEF FGAAPGAYTG
ADRKGRVGKF ELADRGTLFL DEIGDMPLPL QGKLLRVLQD KEFEPVGSNR IVRADVRIIA
ATSADLPALV EAGRFRADLY YRLNVLTIHA PPLRERASDI AALVYATLEE LAAQHGRAAH
CELTDDALRV LCAYPWPGNV RELRNTLERA LMLSDRSVID ARALAPFLGP VRVAPDSVPA
GTRVAPSPAG RDTGDASASP GAPVVSYTDA LAAWERQFLI DALAACDGKV VEAAARIGIG
RATLYKKLAA LGIDRWHAAA DARGHDERHR