| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5391 |
|---|
| Symbol | |
|---|
| ID | 6181537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2629467 |
|---|
| End bp | 2630129 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641685146 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001812051 |
|---|
| Protein GI | 172064400 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5516] Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.421091 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.322257 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGGTTA GATACGATCG CGGCATGAAC AAGACGCAAC CTTCCGTCAC GACGGACTGC
CTGATTCCGG CGCCGTCCGA CACGTTGAGC ATCGATTTCG CGAACACGCT GTACTGGCGC
GGCACCGACG CGCCGACCGA AACCTTCGGC ACGCTGGACG ACCTGTTCGC GTGGTGCCGC
GAGCAGGCGG GCGTGCCGGC CGGCCTGGCC GACGCATGTC GCGCACCAGA GAAGAAACAG
GATGACGAGC CGGCGATGCT CGCGCGCGCG CTCGCGTTGC GCGAGGCGCT GTACCGGCTC
TTTCTTGCGC AAGCGGAGCG GCGCGAGCCG CACGCGGACG ATCTCGCGTT GCTGGGCGGC
TTTCTGGCGG AAGCGGCGCC GCGCGTCGCG CTCGCGCGGA TCGACGGCGG CTATGCGTGG
CGGATCGGGG GGGGCGCCGG CGCCGGGGCG GGCGCGACGC TCGGAGGGCT GTTGAGCCCG
GTGCTGTGGT CGGCGACCGA CCTGCTGGGC AGCGCGCGGC TCGCGAAGGT CAAGCGCTGT
GCGAACGACG CCTGCCAATG GCTGTTCATC GACGACAGCA AGAACGGCAG CCGCCGCTGG
TGCTCGATGT CGTCGTGCGG CAATCGCGCG AAGGCGTATC GCCACTATCA CAAGACCGAT
TGA
|
|---|
| Protein sequence | MVVRYDRGMN KTQPSVTTDC LIPAPSDTLS IDFANTLYWR GTDAPTETFG TLDDLFAWCR
EQAGVPAGLA DACRAPEKKQ DDEPAMLARA LALREALYRL FLAQAERREP HADDLALLGG
FLAEAAPRVA LARIDGGYAW RIGGGAGAGA GATLGGLLSP VLWSATDLLG SARLAKVKRC
ANDACQWLFI DDSKNGSRRW CSMSSCGNRA KAYRHYHKTD
|
|---|
| |