| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5389 |
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| Symbol | prpB |
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| ID | 6181218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2626289 |
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| End bp | 2627182 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641685144 |
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| Product | 2-methylisocitrate lyase |
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| Protein accession | YP_001812049 |
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| Protein GI | 172064398 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2513] PEP phosphonomutase and related enzymes |
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| TIGRFAM ID | [TIGR02317] methylisocitrate lyase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.36576 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.795706 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAATA CGCATCTTCA GAGCGCCGGC GCGAAATTCC GCGCGGCAGT CGCGGCCGAG
CAGCCGCTGC AGGTGGTCGG CGCGATCACC GCGTACGCGG CCAAGATGGC GCAGGCCGTC
GGCTTCAAGG CCGTCTACCT GTCGGGCGGC GGCGTCGCCG CGAATTCGCT CGGGATCCCC
GATCTCGGCA TCAGCACGAT GGAAGACGTG CTGATCGACG CGACCCGGAT CACCAACGCG
ACCGACCTGC CGCTGCTCGT CGACATCGAT ACGGGCTGGG GCGGCGCGTT CAACATCGCG
CGCACGGTCC GCTCGTTCAT CAATGCCGGT GTCGCGGCGG TTCACCTCGA GGACCAGGTC
GGCCAGAAGC GCTGCGGCCA CCGTCCGGGC AAGGAAGTCG TGCCGCTCGA GGAAATGGTC
GATCGCGTGA AGGCCGCGGT CGATGCGCGC ACCGACGACC AGTTCGTGAT CATGGCCCGC
ACCGACGCGG CCGCCGCCGA AGGGATCGAC GCCGCGATCG AGCGCGCGAT CGCCTACGTG
GAAGCCGGCG CCGACATGAT CTTCCCGGAA GCGATGAAGA CGCTCGACGA TTACCGCCGC
TTCAAGGCCG CCGTGAAGGT GCCGATCCTC GCGAACCTGA CCGAATTCGG CTCGACGCCG
CTGTTCACGG TCGACGAGCT GCGCGAGGCG AACGTCGACA TCGCGCTGTA CTGCTGCGGC
GCGTATCGCG CGATGAACAA GGCCGCGCTG AACTTCTACG AGACGCTGCG CCGCGACGGC
ACGCAGAAGG CTGCCGTGCC GACCATGCAG ACCCGCGCGG AGCTGTACGA CTTCCTCGGC
TATCACGAAT ACGAGCGCAA GCTCGACGAA CTGTTCGCGC AGGGCAAGAA GTAA
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| Protein sequence | MSNTHLQSAG AKFRAAVAAE QPLQVVGAIT AYAAKMAQAV GFKAVYLSGG GVAANSLGIP
DLGISTMEDV LIDATRITNA TDLPLLVDID TGWGGAFNIA RTVRSFINAG VAAVHLEDQV
GQKRCGHRPG KEVVPLEEMV DRVKAAVDAR TDDQFVIMAR TDAAAAEGID AAIERAIAYV
EAGADMIFPE AMKTLDDYRR FKAAVKVPIL ANLTEFGSTP LFTVDELREA NVDIALYCCG
AYRAMNKAAL NFYETLRRDG TQKAAVPTMQ TRAELYDFLG YHEYERKLDE LFAQGKK
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