Gene BamMC406_5352 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5352 
Symbol 
ID6180560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2573894 
End bp2575126 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content74% 
IMG OID641685107 
Productmajor facilitator transporter 
Protein accessionYP_001812012 
Protein GI172064361 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.660653 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACTC CGACCCGTCT CGACGCCGCG CCCCGCGCGG CGCATGCACC GGCCCCCACG 
GCCACTTCCT CGCTGCTCGA TCGCCGGCTC GTGCTGCTGC TGGCCGCAGC CGCCGGTCTC
GGCGTCGCGC CGCTCTACTA TGCGCAGCCG ATGCTCGCCG CGCTGGGGCC CGATCTCGGC
GCGTCGGCGC GCGCGATCGG CTTCGTGCCC ACGCTCACGC AGCTCGGCTA TGCGCTCGGC
ATCCTGCTGC TCGCGCCGCT CGGCGACCGC TTCGACCGGC GCCGCGTGAT CGTGACGAAA
GCCGCCGCGC TGGTCGTCGC GCTGCTGCTC GCGGCGGTCG CGCCGTCGCT CGGGCTGTTG
CTGGCCGCGA GCTTCGCGAT CGGCCTGACC GCGACGATGG CGCAGGACGT CGTGCCGGCC
GCCGCGACGC TCGCGCACGA CGCGCATCGC GGCCGCATCG TCGGCACGGT GATGACGGGG
TTGCTGCTCG GCATCCTGCT GTCGCGCGTC GTCGCCGGCT TCGTCGCGGA AACGGCCGGC
TGGCGCGCGA TGTTCGCGCT CGCGGCCGCC AGCGTCGCCG CCATCGGCAT CGTGGCCGCA
CGCGGGCTGC CGCGCTTCGA GCCCACCACG CAGCTGTCGT ACCGCGCGCT GATCGGGTCG
CTCGGCGAAC TGTGGCGCCG TCATCCCGCG CTGCGCCGCG CCGCGCTCGC GCAAGGGCTG
CTGGCCGTCG GGTTCAGCGC GTTCTGGTCG ACGCTCGCGG TGATGCTGCA CGGCGCGCCG
TTCCATCTCG GCAGCGCAGC CGCCGGCGCA TTCGGCCTCG CGGGCGCCGC CGGCGCGCTG
GCCGCACCCG TGGCCGGACG CCTGGCCGAT CACCACGGTC CCGAGCGTGT CACGCGGCTC
GGCATCGGGA TCGCGACCGT GTCGTTCGCC GCGATGGCCG CCGCGCCGCT GCTGACGCCG
CATGCGCAAC TCGCGCTGCT TGCCGCCGCG ACGATCGGCT TCGATCTCGG CGTGCAGGCC
ACGCTGATCG CGCATCAGGC AATCGTCTAC CGAATCGACC CGGCGTCGCG CAGCCGTCTC
AACGCGGTGC TGTTCGTCGG CATGTTCATC GGGATGGCCA CCGGTGCCGC GCTCGGCAGT
TCGTTGCTCG CGCAACTGGG CTGGAATGCG GTGATCGTGC TGGCCGTGGC GACGTCGCTG
GCTGCGCTGG CCGTGCGCGT GTGGCGCCGG TAA
 
Protein sequence
MSTPTRLDAA PRAAHAPAPT ATSSLLDRRL VLLLAAAAGL GVAPLYYAQP MLAALGPDLG 
ASARAIGFVP TLTQLGYALG ILLLAPLGDR FDRRRVIVTK AAALVVALLL AAVAPSLGLL
LAASFAIGLT ATMAQDVVPA AATLAHDAHR GRIVGTVMTG LLLGILLSRV VAGFVAETAG
WRAMFALAAA SVAAIGIVAA RGLPRFEPTT QLSYRALIGS LGELWRRHPA LRRAALAQGL
LAVGFSAFWS TLAVMLHGAP FHLGSAAAGA FGLAGAAGAL AAPVAGRLAD HHGPERVTRL
GIGIATVSFA AMAAAPLLTP HAQLALLAAA TIGFDLGVQA TLIAHQAIVY RIDPASRSRL
NAVLFVGMFI GMATGAALGS SLLAQLGWNA VIVLAVATSL AALAVRVWRR