Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_5352 |
Symbol | |
ID | 6180560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 2573894 |
End bp | 2575126 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 641685107 |
Product | major facilitator transporter |
Protein accession | YP_001812012 |
Protein GI | 172064361 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.660653 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACTC CGACCCGTCT CGACGCCGCG CCCCGCGCGG CGCATGCACC GGCCCCCACG GCCACTTCCT CGCTGCTCGA TCGCCGGCTC GTGCTGCTGC TGGCCGCAGC CGCCGGTCTC GGCGTCGCGC CGCTCTACTA TGCGCAGCCG ATGCTCGCCG CGCTGGGGCC CGATCTCGGC GCGTCGGCGC GCGCGATCGG CTTCGTGCCC ACGCTCACGC AGCTCGGCTA TGCGCTCGGC ATCCTGCTGC TCGCGCCGCT CGGCGACCGC TTCGACCGGC GCCGCGTGAT CGTGACGAAA GCCGCCGCGC TGGTCGTCGC GCTGCTGCTC GCGGCGGTCG CGCCGTCGCT CGGGCTGTTG CTGGCCGCGA GCTTCGCGAT CGGCCTGACC GCGACGATGG CGCAGGACGT CGTGCCGGCC GCCGCGACGC TCGCGCACGA CGCGCATCGC GGCCGCATCG TCGGCACGGT GATGACGGGG TTGCTGCTCG GCATCCTGCT GTCGCGCGTC GTCGCCGGCT TCGTCGCGGA AACGGCCGGC TGGCGCGCGA TGTTCGCGCT CGCGGCCGCC AGCGTCGCCG CCATCGGCAT CGTGGCCGCA CGCGGGCTGC CGCGCTTCGA GCCCACCACG CAGCTGTCGT ACCGCGCGCT GATCGGGTCG CTCGGCGAAC TGTGGCGCCG TCATCCCGCG CTGCGCCGCG CCGCGCTCGC GCAAGGGCTG CTGGCCGTCG GGTTCAGCGC GTTCTGGTCG ACGCTCGCGG TGATGCTGCA CGGCGCGCCG TTCCATCTCG GCAGCGCAGC CGCCGGCGCA TTCGGCCTCG CGGGCGCCGC CGGCGCGCTG GCCGCACCCG TGGCCGGACG CCTGGCCGAT CACCACGGTC CCGAGCGTGT CACGCGGCTC GGCATCGGGA TCGCGACCGT GTCGTTCGCC GCGATGGCCG CCGCGCCGCT GCTGACGCCG CATGCGCAAC TCGCGCTGCT TGCCGCCGCG ACGATCGGCT TCGATCTCGG CGTGCAGGCC ACGCTGATCG CGCATCAGGC AATCGTCTAC CGAATCGACC CGGCGTCGCG CAGCCGTCTC AACGCGGTGC TGTTCGTCGG CATGTTCATC GGGATGGCCA CCGGTGCCGC GCTCGGCAGT TCGTTGCTCG CGCAACTGGG CTGGAATGCG GTGATCGTGC TGGCCGTGGC GACGTCGCTG GCTGCGCTGG CCGTGCGCGT GTGGCGCCGG TAA
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Protein sequence | MSTPTRLDAA PRAAHAPAPT ATSSLLDRRL VLLLAAAAGL GVAPLYYAQP MLAALGPDLG ASARAIGFVP TLTQLGYALG ILLLAPLGDR FDRRRVIVTK AAALVVALLL AAVAPSLGLL LAASFAIGLT ATMAQDVVPA AATLAHDAHR GRIVGTVMTG LLLGILLSRV VAGFVAETAG WRAMFALAAA SVAAIGIVAA RGLPRFEPTT QLSYRALIGS LGELWRRHPA LRRAALAQGL LAVGFSAFWS TLAVMLHGAP FHLGSAAAGA FGLAGAAGAL AAPVAGRLAD HHGPERVTRL GIGIATVSFA AMAAAPLLTP HAQLALLAAA TIGFDLGVQA TLIAHQAIVY RIDPASRSRL NAVLFVGMFI GMATGAALGS SLLAQLGWNA VIVLAVATSL AALAVRVWRR
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