Gene BamMC406_5262 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5262 
Symbol 
ID6181247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2473745 
End bp2474776 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content55% 
IMG OID641685017 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001811922 
Protein GI172064271 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGATTCA CCCGTAGAAA CTTTCTCATC ACCGGAACCG GAGCAGTCGT TGTTGCGGCG 
ACAGGCCTCC TGGATGGTCC GTGGATTCGG CGCGCCAATG CTGCAGAATT TTCCTATAAG
GTCGGGACGA ACCTACCGGC AACTCACCCT CTGAACGTGC GCATCCAAGA GGCATCGGAT
GCGATCAAAA AGGAGACAGA TGGTCGAGTC GAACTTCGGG TGTTTCCGAA TAATCAGCTC
GGTGGCGACC CGGACATGTT CTCGCAGTTG CGAGCTGGGG CACTGGAGTT TTATACGGTT
TCGGGCGCAA ATACCTTGTC GACCCTGGTT CCGAAGGCAT CCATTTCTGG CGTCGGCTTC
GCGTATAAAG ACTATGACCA GGTATTCGCG GCATTCGATG GCGACCTTGG CGCCCATATT
CGCGGGCTTA TTGGAAAGGC GAATCTGGTT GTTCAGGACA AGATCTGGAA CAATGGGTTC
CGCCAGATCA CGACCAGTAC GAAGCCCATC AAGACTCCTG CTGACCTGCA GGGCATGAAA
ATCCGGGTGC CGGGTGGTCG TCTCTGGATC TCGCTGTTCA AGGCGCTTTC CGCCGCCCCG
GCGTCGATCA GCTTCAACGA AGTCTATTCC TCATTGCAGA CAAAGGTCGT CGACGGACAG
GAGAACGCGC TGGCTGTAGT AGACGCCGCG AAGCTTTATG AAGTCCAGAA ATACTGCTCG
ATGACAAACC ACATGTGGGA CGGCTACTGG TTCTTGGGTA ACAAGACAGC GTGGGAAAAA
ATGCCGCCCA CCGTCCGTGA CATCGTCTCA AAGCACCTCA ATGCGGGGGC ACTGAAGCAA
CGACAAGACG TGATCCAGTT GAACGCCTCC CTGCAAAAGA CGCTTGCGGG CAGAGGGCTT
GCGTTTAACA CCGCTGACAC GAACGCGTTC CGCCAAACCC TGAAATCCGC GAACTTCTAC
ACGGAGCAGA AGCAATTCTT CGGAGACGAA GAATGGAGTC TCATGGAGAA ATACACGGGG
AAGCTCGCAT GA
 
Protein sequence
MGFTRRNFLI TGTGAVVVAA TGLLDGPWIR RANAAEFSYK VGTNLPATHP LNVRIQEASD 
AIKKETDGRV ELRVFPNNQL GGDPDMFSQL RAGALEFYTV SGANTLSTLV PKASISGVGF
AYKDYDQVFA AFDGDLGAHI RGLIGKANLV VQDKIWNNGF RQITTSTKPI KTPADLQGMK
IRVPGGRLWI SLFKALSAAP ASISFNEVYS SLQTKVVDGQ ENALAVVDAA KLYEVQKYCS
MTNHMWDGYW FLGNKTAWEK MPPTVRDIVS KHLNAGALKQ RQDVIQLNAS LQKTLAGRGL
AFNTADTNAF RQTLKSANFY TEQKQFFGDE EWSLMEKYTG KLA