| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5261 |
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| Symbol | |
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| ID | 6181264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2471838 |
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| End bp | 2473748 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 641685016 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001811921 |
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| Protein GI | 172064270 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.529931 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAACGC AAATGCTGAA AGACGTGGAT GACGCACTCG AACAACAGAC CAGCGCAACA
GTCCATCACG CAACGAAGAC TATGCCACGC TGGCTGTCCC GTGTGGACTT TGCGCTTGGC
GTAATCGTCT CTGTGCCTGC GGCACTGCTG GTGCTAGCAG AAGTTATCCT GCTTTTCAGC
GGCGTTGTTG CTCGTTATGT CCTGCACCAC CCGTTAATCT GGAGCGACGA ACTCGCTGCC
ATCCTGTTTC TCTGGCTAGC AATGACAGGT GCCGCTACGG CGTTGCACCG AGGCAGCCAC
ATGCGCATGA CGGCACTTGT CAACCGCATG GGCGAGCACT GGGATCCGTT CTGGGACACC
ATTTCGACGG TGGCGAGCAT GCTTTTTCTC GGGCTCATAC TTGTTCCATC GATCGCTTAC
ATCAAGCAGC AGTGGGACAT TTTGACCCCG ACAATGGAGA TCAATGACGG CGTACGCGTT
GCGGCTATCA TCTTCGGGGT TGTGTCGATG CTGCTGATCT GCGTGGTCAA GTTGTTAGCA
ATCGGCTGGA GGACCGCTAT CGCTGGGGTT GCGGTGTCGC TAGTAAGTGT GTTTGCGTTG
GAACATGCCG GACCCGTTTT GCAATCGCTT GGAAACCTTA ACCTGGTGAT TTTCTTCGTT
GGAGTGGTCG GCTTCACGGT CTTGAGCGGC ATGCCCATCG CATTCTCCTT CGGTCTTTCC
GTGTTTGCTT ACCTTTCAAT GTCAACCTCC ATGCCGCTGG AAATCGTCGT CAGCCGCATG
GACGAAGGAA TGTCGCAAAT CCTTCTGTTG GCGGTGCCGA TGTTTATTTT CCTCGGGCTT
CTCATTGAGA TGACAGGGAT GGCACGGGCG ATGATCAACT TCCTGGCATC GTTGCTGGGC
CATGTGCGCG GTGGTCTTTA CTATGTCTTG GTCGGTGCGA TGTATCTGAT TTCGGGGATC
TCCGGCTCGA AGGCAGCCGA TATGGCAGCT GTTGCTCCAA TTCTGTTCCC TGAGATGAAG
AAGCGTGGCG AGAATCCCGG CGAGCTCGTG GCGTTGCTAT CGGCTACCGG CGCGCAAACT
GAGACGGTCC CACCAAGCAT TGTGCTCATC ACGATCGGAT CGGTTACGGG GGTATCAATC
TCTGCGCTCT TTACGGGCGG TCTGTTGCCG GGCCTTGTAC TGGCGTTCAT GTTATGCATG
CTCGTCTGGT GGCGGGCTCG AAAGACTGAA CCCACGTCGT CCGGGAGACC CGCGTGGTCC
TTTGTCGGGA AAGCGTTTGT GATATCGATC CCGGCACTCG CACTTCCGGT TGTCATCCGT
TTGGCGGTGG TGGAGGGAGT GGCAACGGCA ACGGAGGTCT CAACGGTTGG AATCGCCTAT
GCCGTCGTCG CCGGACTCTT GGTGTATCGA TGCTTTAATT GGAAGCGAAT CGGCCCCATG
CTCGTGGAGA CGGCTGCTCT TTCGGGAGCT ATCCTTATCA TCATTGGTAC GGCTACCGCG
ATGGCGTGGG CGCTCACCCA GTCTGGCTTC TCCCATGGAC TGGCCGACTT CATGCAGCAT
CTGCCTGGCG GCGCATTCTC CTTCATGGTC GTGTCAATCT TCATGTTCAT CATATTGGGT
AGCGTCCTTG AAGGAATCCC TGCAATCGTG CTCTTCGGCC CGTTACTGTT CCCGATTGCT
CGAGCTGTTG GCATCCACGA AGTTCAATAT GCAATGGTCG TGATTCTCTC GATGGGACTG
GGGCTGTTCT CGCCGCCGTT CGGAGTCGGC TACTATGGGG CGTGTGCAGT CAGCAAGATC
TCGCCGAATC TGGGCATCCG ACCCATCATG GGTTATATGG CCGCGTTGTT TATTGGGATC
ACGATGATCG CCGCAGTGCC TTGGATTTCC ACCGGCTTTT TGAAGGGTTA A
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| Protein sequence | MRTQMLKDVD DALEQQTSAT VHHATKTMPR WLSRVDFALG VIVSVPAALL VLAEVILLFS
GVVARYVLHH PLIWSDELAA ILFLWLAMTG AATALHRGSH MRMTALVNRM GEHWDPFWDT
ISTVASMLFL GLILVPSIAY IKQQWDILTP TMEINDGVRV AAIIFGVVSM LLICVVKLLA
IGWRTAIAGV AVSLVSVFAL EHAGPVLQSL GNLNLVIFFV GVVGFTVLSG MPIAFSFGLS
VFAYLSMSTS MPLEIVVSRM DEGMSQILLL AVPMFIFLGL LIEMTGMARA MINFLASLLG
HVRGGLYYVL VGAMYLISGI SGSKAADMAA VAPILFPEMK KRGENPGELV ALLSATGAQT
ETVPPSIVLI TIGSVTGVSI SALFTGGLLP GLVLAFMLCM LVWWRARKTE PTSSGRPAWS
FVGKAFVISI PALALPVVIR LAVVEGVATA TEVSTVGIAY AVVAGLLVYR CFNWKRIGPM
LVETAALSGA ILIIIGTATA MAWALTQSGF SHGLADFMQH LPGGAFSFMV VSIFMFIILG
SVLEGIPAIV LFGPLLFPIA RAVGIHEVQY AMVVILSMGL GLFSPPFGVG YYGACAVSKI
SPNLGIRPIM GYMAALFIGI TMIAAVPWIS TGFLKG
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