| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5228 |
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| Symbol | |
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| ID | 6180402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2429511 |
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| End bp | 2431052 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641684984 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001811889 |
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| Protein GI | 172064238 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAACA TGTACAACTC GAATGGCCTG ATGCGCTTCG CGAAGGTGGC GGCCGCGAGC
ACCCTGCTCG CGACGCTGCT CGCCGCGTGC GCAGTGGGCC CGGACTACAA GCGCCCGGAC
GTGTCGACGC CCGCGGCGTT CAAGGAAGCG CCGACGCTCG CGGCCGGCGA ACAGGCCGGC
ACGTGGAAGA CCGCCGAACC GGCGGACGGC GAGCATCGCG GCGAATGGTG GAAGGTGTTC
GGCGATCCGG TGCTCGACTC GCTCGAGGCG CAGGCGCTCG CGGCGAACCA GAACCTGAAG
GCCGCGGCGG CGCGCGTCGA GGAAGCGCGT GCGGCGACCC GCACCGCGCG CTCGCAGTGG
TTCCCGCAGG TCGGCGCCGG ATTCGGGCCG ACGCGCGAGG GGCTGTCGTC GGCGTCGCAG
TTCCAGCCGC AGGGCACGGG CCCGACCAAC GCGACGCTGT GGCGCGCACA GGGCACGGTG
TCCTACGAGG CCGACCTGTT CGGCCGCGTG AGCCGCAACG TCGAGGCGTC GCGTGCCGAC
CAGGCGCAGA GCGAAGCGCT GTTCCGCTCG GTGCAGCTCG CGCTGCAGGC GGACGTCGCG
CAGAACTACT TCGAACTGCG CCAGCTCGAT TCCGACCAGG ATCTGTACCG CCGCACGGTC
GAGCTGCGCG ACCAGGCGCT GAAGCTCGTG CAGCGTCGCT TCAACGAAGG CGACATCAGC
GAGCTCGACG TGTCGCGCGC GAAGAACGAA CTGGCGACCG CGCAGGCCGA TGCGGTCGGC
GTCGCGCGCC GGCGCGCGGC GTCCGAGCAT GCGCTTGCGA TCCTGCTCGG CAAGGCGCCC
GCGGACTTCG CGTTCAAGGA AACGCCGATC GTGCCGGTCG CGGTGAAGGT TCCGGCGGGA
CTGCCGTCCG CGCTGCTCGA ACGGCGCCCT GACGTGTCGG CGGCCGAGCG CGCGATGGCG
GCGGCGAACG CGCGGATCGG CCTCGCGAAG TCGGCGTATT TCCCGAAGCT CGATATCACG
GGCGCGTTCG GGTATGAGGC GTCGACGCTC GGCAACCTGT TCCTGTGGTC GAGCCGCACG
TTCCTGCTCG GACCGTTCGC CGGTACCGCG CTGACGCTGC CGCTGTTCGA CGGCGGGCGC
CGTGCGGCCG GCGTGCAGCA GGCGCGCGCG CAGTACGACG AACAGGTCGC GAACTACCGG
CAGCAGGTGC TCGTCGCGTT CCGCGAGGTC GAGGACAACC TCGCCGATCT GCGTCTGCTC
GACGACCAGA TTCGCGCGCA GGATGCGGCC GTCAACGCGT CGCGCCGTGC GGCGACGCTG
TCGCGTACGC AGTATCAGGA AGGTGAAGTC GCCTATCTCG ACGTGATCGA CAGCGAGCGG
TCGGTGCTGC AGTCGCAATT GCAGGCGAAC CAGCTGACCG GTGCGCAGGC CGTGTCGACC
GTCAACCTGA TTCGCGCGCT GGGCGGTGGG TGGGGTGCGG CGCCGGCGCC GGCCGCCGTC
GGCGATGCGG CGACGGGCAA GGCGGAGGTG GCGGCGCGCT GA
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| Protein sequence | MDNMYNSNGL MRFAKVAAAS TLLATLLAAC AVGPDYKRPD VSTPAAFKEA PTLAAGEQAG
TWKTAEPADG EHRGEWWKVF GDPVLDSLEA QALAANQNLK AAAARVEEAR AATRTARSQW
FPQVGAGFGP TREGLSSASQ FQPQGTGPTN ATLWRAQGTV SYEADLFGRV SRNVEASRAD
QAQSEALFRS VQLALQADVA QNYFELRQLD SDQDLYRRTV ELRDQALKLV QRRFNEGDIS
ELDVSRAKNE LATAQADAVG VARRRAASEH ALAILLGKAP ADFAFKETPI VPVAVKVPAG
LPSALLERRP DVSAAERAMA AANARIGLAK SAYFPKLDIT GAFGYEASTL GNLFLWSSRT
FLLGPFAGTA LTLPLFDGGR RAAGVQQARA QYDEQVANYR QQVLVAFREV EDNLADLRLL
DDQIRAQDAA VNASRRAATL SRTQYQEGEV AYLDVIDSER SVLQSQLQAN QLTGAQAVST
VNLIRALGGG WGAAPAPAAV GDAATGKAEV AAR
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