| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5197 |
|---|
| Symbol | |
|---|
| ID | 6179902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 2395498 |
|---|
| End bp | 2396634 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641684953 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001811858 |
|---|
| Protein GI | 172064207 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.308157 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.258081 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCTGA AGGTATCGCA CGTCGCGCTG GCTGCTGCCT GCGCACTGTC GGGCGCACAC
GCCATCGCCG CCGACGTCGT CAAGATCGGT TTCGCCGCAC CGCTGACGGG GCCGCAGTCG
AACTACGGCG CGGACATGCA GAAGGGCGTG CAACTCGCGA TCGCCGATTT CAACGCAACG
CATCCGACGA TCGGCGGCAA GCCCGTCACG TTCCAGCTCG ACTCGCAGGA CGACCAGGCC
GACCCGCGCA CCGGCACGAC CGTCGCGCAG CGGCTGATCG ACGACAATGT CCGCGGCGTG
ATCGGCCACT TCAACTCGGG CACGAGCATT CCGGCGTCCG ACCTGTACGA TCGCGCGGGG
CTGCCGCAGA TCTCGATGGC GACGTCGCCG CAATACACGG CGCGCGGCTA CAAGACGACC
TACCGGCTGC TGACGAGCGA CGCGCAGGCC GGCCGCATCG TCGGCACCTA TGCGGTGAAG
TCGCTGCACT TCAAGCGCAT CGCGATCATC GACGACCGCA CGGCCTACGG CCAGGGCATC
GCCGACGAAT TCGCGAAAGC CGTGCAGGCC GCGGGCGGCA CGATCGTCAA GCGCGACTTC
ACGAACGACA AGGCGCTCGA CTTCTCCGCG ATCCTGACCA ATCTGAAGGG CGTCAACCCC
GACGCGATCT TCTACGGCGG CGGCGATGCG CAGTCTTCGC CGATGATCCG CAAGATGCGC
CAGCTCGGCA TGAAGTCGGC ATTCGTGACC GGCGAGATGT CGCGCTCGCC GACGTTCCTG
AAGGTCGGCG GCGAAGCGGC CGAAGGCGCG ATCGTCTACA TGGGCGGGCT GCCGAAGGAA
AAGATGCCGG GCTTCGCCGG CTACGCATCG CGCTACAAGG CACGCTTCAA CGAAGACGTG
ATCACCTACT CGCCCTACGC GTACGACGGC ACGATCGCGC TGCTCACCGC GATGAAGGAC
GCGAACTCGA CCGACCCGAA GGTCTATACG CCGTATCTCG GCAAGGTGTC GGTCAAGGGC
GTGTCGGCGC CGAGCATCGC GTACGACGCG AAGGGCGACC TGAAGGATGC GCCGGTGACG
ATCTACAAGG TCGAGCACGG CGCGTTCAAG CCGGTCGACA CGATCGCCGG CAACTGA
|
|---|
| Protein sequence | MKLKVSHVAL AAACALSGAH AIAADVVKIG FAAPLTGPQS NYGADMQKGV QLAIADFNAT
HPTIGGKPVT FQLDSQDDQA DPRTGTTVAQ RLIDDNVRGV IGHFNSGTSI PASDLYDRAG
LPQISMATSP QYTARGYKTT YRLLTSDAQA GRIVGTYAVK SLHFKRIAII DDRTAYGQGI
ADEFAKAVQA AGGTIVKRDF TNDKALDFSA ILTNLKGVNP DAIFYGGGDA QSSPMIRKMR
QLGMKSAFVT GEMSRSPTFL KVGGEAAEGA IVYMGGLPKE KMPGFAGYAS RYKARFNEDV
ITYSPYAYDG TIALLTAMKD ANSTDPKVYT PYLGKVSVKG VSAPSIAYDA KGDLKDAPVT
IYKVEHGAFK PVDTIAGN
|
|---|
| |