Gene BamMC406_5197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_5197 
Symbol 
ID6179902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2395498 
End bp2396634 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content66% 
IMG OID641684953 
Productextracellular ligand-binding receptor 
Protein accessionYP_001811858 
Protein GI172064207 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.308157 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.258081 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGCTGA AGGTATCGCA CGTCGCGCTG GCTGCTGCCT GCGCACTGTC GGGCGCACAC 
GCCATCGCCG CCGACGTCGT CAAGATCGGT TTCGCCGCAC CGCTGACGGG GCCGCAGTCG
AACTACGGCG CGGACATGCA GAAGGGCGTG CAACTCGCGA TCGCCGATTT CAACGCAACG
CATCCGACGA TCGGCGGCAA GCCCGTCACG TTCCAGCTCG ACTCGCAGGA CGACCAGGCC
GACCCGCGCA CCGGCACGAC CGTCGCGCAG CGGCTGATCG ACGACAATGT CCGCGGCGTG
ATCGGCCACT TCAACTCGGG CACGAGCATT CCGGCGTCCG ACCTGTACGA TCGCGCGGGG
CTGCCGCAGA TCTCGATGGC GACGTCGCCG CAATACACGG CGCGCGGCTA CAAGACGACC
TACCGGCTGC TGACGAGCGA CGCGCAGGCC GGCCGCATCG TCGGCACCTA TGCGGTGAAG
TCGCTGCACT TCAAGCGCAT CGCGATCATC GACGACCGCA CGGCCTACGG CCAGGGCATC
GCCGACGAAT TCGCGAAAGC CGTGCAGGCC GCGGGCGGCA CGATCGTCAA GCGCGACTTC
ACGAACGACA AGGCGCTCGA CTTCTCCGCG ATCCTGACCA ATCTGAAGGG CGTCAACCCC
GACGCGATCT TCTACGGCGG CGGCGATGCG CAGTCTTCGC CGATGATCCG CAAGATGCGC
CAGCTCGGCA TGAAGTCGGC ATTCGTGACC GGCGAGATGT CGCGCTCGCC GACGTTCCTG
AAGGTCGGCG GCGAAGCGGC CGAAGGCGCG ATCGTCTACA TGGGCGGGCT GCCGAAGGAA
AAGATGCCGG GCTTCGCCGG CTACGCATCG CGCTACAAGG CACGCTTCAA CGAAGACGTG
ATCACCTACT CGCCCTACGC GTACGACGGC ACGATCGCGC TGCTCACCGC GATGAAGGAC
GCGAACTCGA CCGACCCGAA GGTCTATACG CCGTATCTCG GCAAGGTGTC GGTCAAGGGC
GTGTCGGCGC CGAGCATCGC GTACGACGCG AAGGGCGACC TGAAGGATGC GCCGGTGACG
ATCTACAAGG TCGAGCACGG CGCGTTCAAG CCGGTCGACA CGATCGCCGG CAACTGA
 
Protein sequence
MKLKVSHVAL AAACALSGAH AIAADVVKIG FAAPLTGPQS NYGADMQKGV QLAIADFNAT 
HPTIGGKPVT FQLDSQDDQA DPRTGTTVAQ RLIDDNVRGV IGHFNSGTSI PASDLYDRAG
LPQISMATSP QYTARGYKTT YRLLTSDAQA GRIVGTYAVK SLHFKRIAII DDRTAYGQGI
ADEFAKAVQA AGGTIVKRDF TNDKALDFSA ILTNLKGVNP DAIFYGGGDA QSSPMIRKMR
QLGMKSAFVT GEMSRSPTFL KVGGEAAEGA IVYMGGLPKE KMPGFAGYAS RYKARFNEDV
ITYSPYAYDG TIALLTAMKD ANSTDPKVYT PYLGKVSVKG VSAPSIAYDA KGDLKDAPVT
IYKVEHGAFK PVDTIAGN