| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5192 |
|---|
| Symbol | |
|---|
| ID | 6179880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2389983 |
|---|
| End bp | 2390837 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641684948 |
|---|
| Product | shikimate 5-dehydrogenase |
|---|
| Protein accession | YP_001811853 |
|---|
| Protein GI | 172064202 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.746305 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCC CGTCTTTTCT GATCGGCCTG ATCGGCCAGG GTATCGGCGG TTCGCTGTCG
CCCGCGATGC ATGAGGAAGA GGGATTCCGC CAGGGATTCG GCTACGTATA CCGGCGCATC
GATCTCGACG CGCTCGGCCT GACCGTCGAC GCGCTGCCGC AACTGCTCGA GGCCGCGCAG
CGGATGGGCT ACAACGGGCT GAACATCACG CACCCGTGCA AGCAGCGCGT GATCGAGCAC
CTCGACGCGC TGTCGGACGA CGCGCGCGCG CTCGGCGCGG TGAACACCGT GCTGTTCAAG
GACGGCAAGC GGATCGGCCA CAACACCGAC TGGTCGGGTT TCGCGAAGTC GTTCCGCCGC
GGGCTTCCCG ACGCGTCGCT CGAGCGCGTC GTCCAGCTCG GTGCGGGTGG GGCCGGCGCG
GCCGTCGCAC ATGCGGCGCT GCAGATGGGC GCCGCCGAAT TGACGATTTT CGACGTCGAC
GGCACGCGTG CCGACACGCT CGCGAGCGAA CTGCAGCAGC GCTTCCCGGT CGCCCGGGTC
ACGCCGGGCA GCGATCGCGC GGCCGCGATG CGCGCCGCGA CGGGCCTGAT CCATGCAACG
CCGACCGGCA TGACCAAGCA TCCGGGGCTG CCGCTGCCGG CCGAACTGCT CCATGCGGGA
ATGTGGGTGG CCGACATCGT GTATTTCCCG CTCGAAACCG AACTGATTCG CGCGGCACGC
GCGGCCGGCT GCGCGACGCT GCCGGGCGGC GGAATGGCCG TGTACCAGGC AGTCGACGCG
TTCGAGATCT TCACCGGACG TACGCCGGAC GACGAGCGGA TGTTCGAGCA CTTTCAGTCG
CTCGTCGCGC GCTGA
|
|---|
| Protein sequence | MSRPSFLIGL IGQGIGGSLS PAMHEEEGFR QGFGYVYRRI DLDALGLTVD ALPQLLEAAQ
RMGYNGLNIT HPCKQRVIEH LDALSDDARA LGAVNTVLFK DGKRIGHNTD WSGFAKSFRR
GLPDASLERV VQLGAGGAGA AVAHAALQMG AAELTIFDVD GTRADTLASE LQQRFPVARV
TPGSDRAAAM RAATGLIHAT PTGMTKHPGL PLPAELLHAG MWVADIVYFP LETELIRAAR
AAGCATLPGG GMAVYQAVDA FEIFTGRTPD DERMFEHFQS LVAR
|
|---|
| |