| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5154 |
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| Symbol | |
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| ID | 6179838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 2331486 |
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| End bp | 2333930 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641684905 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001811815 |
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| Protein GI | 172064164 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0457644 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCATAC AACGACTCTC CACGTACGCA CGCCGGATCG CGCTGTTCGC GTTGCTGCAG
TTCGCTGCGC TCGCGACCGC GTCGGCGTTT CCCGGCGCCG CATCCGCGCC GAGCGCGAGC
GGCGTCGGCG TCCCCGTGCC GACCATCTCG CTGAACGACG CGGTTGCGCA GCTCAAGCAG
ATGCAGGTGC AACAGGACCG CATCAAGCAG CAGACGTCGA ACGCCACCAA CAGCAAGGAG
CTCGACGGGC TCGGCGAAGC GACGCAGGAA CTGAGCGCCG ATGTCGAGAA GCTGCAGAGC
GAGCTCGCGC CGCAGCGCAC GCAGATCCAG GCTCAGCTCG ACGTGCTCGG CCCGCCGCCG
GCGCCGGGCG CGTCGCCCGA AACGCCCGCG GTCGCGCAGC AGCGGGCGAC GCTGAACGCG
CGCAAGACGC AAATCGAAGC GGCGCTGAAG CAGGCGGCCG ACCAGAAGGC CAACCTGGCG
AACCTGAACG ACCAGTTCGC GAAACTGCAC CGCAGCCTGC TGCGCAACCA GCTCGCGTTC
CGTTCGGGCA GCATCTTCGG TGCGCAATTC TGGCTGCCGC TGTTCCATCT GTCGCCGGAC
GATGTCCAGC GCCTCGAGGA CTTCAACGAC GAACTGCGCG ACATGCTGCG CTCGTCGTGG
ACACCCGGCC AGCGCGCCAT CACCACGCTG CTGCTGATCG CCGCGCTCGC GGTCTGGCTC
GGCGGCCGCC GCCTCGTCGA GCGCGGGCTC GCGTGGTTCT GCCTGAACCG TCTGCCGCCC
ACCCGGTTGC GCCGCAGCGC ACTGGCGCTG GCGACGGCAT TCTCGACGCT GCTGGCGACC
GCGGTCGCCG TGCAGGTGCT TTATCTCGCG CTCGCCCGCC ACTACGAGCT CACGCCGTCG
ATGAGCGATC TGTGGGACCA GTTCGCGAAG CTCGCCGTGA CCTGCGCGCT GATCGCCGGC
CTCGGCCGCG CGCTGCTCTG CACGAAGCAT CCGTCGTGGC GGCTGCCGGC GCTCGCCGAT
CCCGTCGCGC TCGCGATGCG GCCGTTCCCC GGCGTGCTGG CCGCGCTGCT GCTGATGTCC
GGCACGCTCG AATCGATCAA CCGGATCGTC GATACCAGCC TGTCCGTCAC GCTGCTCGGC
CGCGGCATCG TATCGCTCGT CGTCGCGCTG ACCGTCGGCG CGTCGATCCT GCGCGCGAAC
CGCGTACGCA CCGCGCTCGC GGCATCCGGC GAGGCGCCCG AGGAGCGTTC GACGCTCGCG
GGGCTGATCC ATGCGGGCGT CACGCTGGCG ATCGTCGTGT CGCTCGTTGC GCTGCTGATC
GGCTACATCA CGGTCGCGCG CTTCATCACG TACGAGCTCG TGTGGTTCGA GATCGTGCTG
TGCAGCGTCT ACATCCTGAC GCAGCTCACG CGCGACGCGA GCGAGAGCCT GTTCTCCGCG
AACCTGTCGA GCGGCAAGCA GATCAAGCAC CTGTTCGCGC TCGACGACCG GCATCTCGAG
CAGGCGCACA CCGTCGTGTC CGGACTCGGC ACGAGCCTGC TGATGCTGGT CGCGGCCATC
GCGCTGGTGA CGGGCGGCTT CGGCACGACG CCGAGCGACC TGCTCGACAG CGCGATCGCG
ATGATCGGCG GCCAGCGGCT GCAGAGCCTG AACATCATGC CCGACCGGAT CCTGAACGCC
GTCATCGGGT TCGCGATCGG CTTCTACCTG CTGCGCTCGG TGCGCCGCTG GCTCGACAAC
GAATTCATGC CGGCGCTCGG CATGGACGCG GGGATGCGCG TGTCGCTGGT CACGCTGTTC
ACCAACGTCG GCTACGTGCT GCTCGTGCTG ATGACGCTGG GGCTGCTCGG TGTCAGGTGG
AGCAACCTCG CGTGGATCGT CAGCGCGCTG TCGGTCGGTA TCGGTTTCGG CCTGCAGGAG
ATCGTGAAGA ACTTCGTGTC GGGGCTGATC CTGCTGACCG AGCGGCCGGT GAAGGTCGGC
GACATGGTCA GCATCGCGGG CGTCGAAGGC GACATCCGCC GCATCAACGT GCGCGCGACC
GAGATCCAGC TCAGCGATCG TTCGACCGTG ATCGTGCCGA ACTCGCAGCT GATCTCGCAG
AACGTGCGCA ACGTGACGAT GGGCAACAGC ACGCAAGGCG TCGCGACGCT GATGCTGACG
TTTCCGCTGA ACACCGATCC CGAGCAGGTG CGCGACCTGC TGCTCGATGC GTATCGCGAA
CACCCGGCGA TTCTCGACAA GCCGGCGCCG TCGGTCACGT TCAGCCAGCT GGCGCCGGAC
GGGATCACGC TGAGCGTGAC GGGTTACGTG GCGAGCCCGC GGATCGCGGC CTCGACCAAA
AGCGACCTGC TGTTCGAGAT CCTGAAGCAG TTGCGCGCGG CGCAGATCAC GCTGTCGACG
CCGCAGATGC TGGTCGTGCA GAACATGCCG GCGCTGGAGA AGTGA
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| Protein sequence | MSIQRLSTYA RRIALFALLQ FAALATASAF PGAASAPSAS GVGVPVPTIS LNDAVAQLKQ
MQVQQDRIKQ QTSNATNSKE LDGLGEATQE LSADVEKLQS ELAPQRTQIQ AQLDVLGPPP
APGASPETPA VAQQRATLNA RKTQIEAALK QAADQKANLA NLNDQFAKLH RSLLRNQLAF
RSGSIFGAQF WLPLFHLSPD DVQRLEDFND ELRDMLRSSW TPGQRAITTL LLIAALAVWL
GGRRLVERGL AWFCLNRLPP TRLRRSALAL ATAFSTLLAT AVAVQVLYLA LARHYELTPS
MSDLWDQFAK LAVTCALIAG LGRALLCTKH PSWRLPALAD PVALAMRPFP GVLAALLLMS
GTLESINRIV DTSLSVTLLG RGIVSLVVAL TVGASILRAN RVRTALAASG EAPEERSTLA
GLIHAGVTLA IVVSLVALLI GYITVARFIT YELVWFEIVL CSVYILTQLT RDASESLFSA
NLSSGKQIKH LFALDDRHLE QAHTVVSGLG TSLLMLVAAI ALVTGGFGTT PSDLLDSAIA
MIGGQRLQSL NIMPDRILNA VIGFAIGFYL LRSVRRWLDN EFMPALGMDA GMRVSLVTLF
TNVGYVLLVL MTLGLLGVRW SNLAWIVSAL SVGIGFGLQE IVKNFVSGLI LLTERPVKVG
DMVSIAGVEG DIRRINVRAT EIQLSDRSTV IVPNSQLISQ NVRNVTMGNS TQGVATLMLT
FPLNTDPEQV RDLLLDAYRE HPAILDKPAP SVTFSQLAPD GITLSVTGYV ASPRIAASTK
SDLLFEILKQ LRAAQITLST PQMLVVQNMP ALEK
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