| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5037 |
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| Symbol | |
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| ID | 6179679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 2202868 |
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| End bp | 2204568 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641684789 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001811699 |
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| Protein GI | 172064048 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGACAC GCGAATACGA CTACATCATC TGCGGCGCCG GTTCCGCGGG CAACGTGCTC
GCGACGCGCC TGACGGAAGA TCCGAACGTC ACGGTGCTGC TGCTCGAAGC GGGCGGCCCC
GACTACCGCT TCGACTTCCG CACGCAGATG CCGGCAGCGC TCGCCTATCC GCTGCAGGGC
CGTCGCTACA ACTGGGCCTA CGAGACCGAC CCCGAGCCGC ACATGGACAA CCGCCGGATG
GAATGCGGCC GCGGCAAGGG GCTCGGCGGC TCGTCGCTGA TCAACGGGAT GTGCTACATC
CGCGGCAACG CGCTCGACTA CGACAACTGG TCGACGCACA AGGGGCTCGA GAACTGGACG
TATCTCGACT GCCTGCCGTA CTTCAAGAAA GCCGAGACGC GCGACGTCGG CCCGAACGAC
TATCACGGCG GCGACGGCCC CGTGTCGGTC ACGACCAGCA AGCCGGGCGT GAACCCGCTG
TTCGAGGCGA TGGTCGATGC GGGCGTGCAG GCCGGCTATC CGCGCACCGA CGACCTGAAC
GGCTATCAGC AGGAAGGCTT CGGCCCGATG GACCGCACCG TCACGCCGAA GGGCCGCCGC
GCGAGCACCG CGCGCGGCTA CCTCGACCAG GCGAAGGGCC GGCCGAACCT CGAGATCGTC
ACGCACGCGC TCGCCGACCG CATCCTGTTC GACGGCAAGC GCGCGTCGGG CGTCACGTAC
CTGCGCGGCA GCGAGCGCGC GAATGCGCAC GCGCGCCGCG AGGTACTCGT GTGCAGCGGC
GCGATCGCGT CGCCGCAGTT GCTGCAGCGC TCGGGCGTCG GCCCCGGCGC ATGGCTGAAG
GAACTCGACA TCCCGATCGT GCTCGACCTG CCCGGCGTCG GCCAGAACCT GCAGGATCAC
CTGGAGATGT ACATCCAGTA CGAGTGCAAG GAGCCGGTGT CGCTGTATCC GGCGCTCAAG
TGGTGGAACC AGCCGAAGAT CGGCCTCGAA TGGATGCTGA ACGGCACGGG CCTCGGCGCG
AGCAACCACT TCGAGGCGGG CGGCTTCATC CGCACGCGCG ACGACGATCC CTGGCCGAAC
ATCCAGTATC ACTTCCTGCC CGTTGCGATC AACTACAACG GCTCGAACGC GATCGAGATG
CACGGCTTCC AGGCGCACGT CGGGTCGATG CGTTCGCCGA GCCGCGGCCG CGTGAAGCTG
CGCTCGCGCG ATCCGAACGC GCACCCGAGC ATCCTGTTCA ACTACATGGC CGAAGCGCTC
GACTGGCGCG AGTTCCGCGA TGCGATCCGC GCGACGCGCG AGATCATGCG GCAGCCCGCG
CTCGACCGCT ATCGCGGCCG CGAGCTGAAC CCGGGCGCCG ACTGCAAGTC CGACAAGGAG
CTCGACACGT TCGTGCGGTC CCGCGCGGAA ACCGCGTTCC ATCCGTCGTG CTCGTGCAAG
ATGGGCTACG ACGACATGGC CGTGGTCGAC GAGGAAGGTC GCGTGCACGG GCTGGAAGGG
CTGCGCGTCG TCGATGCGTC GATCATGCCG ATCATCACGA CCGGCAACCT GAACGCGCCG
ACGATCATGA TCGCGGAGAA GATCGCCGAC AAGATCCGCG GCCGCCAGCC GCTTGCGCGT
GTCGACGTGC CCTACTTCGT CGCGAACGGA GCGATGGCGC GCAATGTCGC GAAGGCGGTG
CGGCAGCCGG AGACGGTGTA A
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| Protein sequence | MTTREYDYII CGAGSAGNVL ATRLTEDPNV TVLLLEAGGP DYRFDFRTQM PAALAYPLQG
RRYNWAYETD PEPHMDNRRM ECGRGKGLGG SSLINGMCYI RGNALDYDNW STHKGLENWT
YLDCLPYFKK AETRDVGPND YHGGDGPVSV TTSKPGVNPL FEAMVDAGVQ AGYPRTDDLN
GYQQEGFGPM DRTVTPKGRR ASTARGYLDQ AKGRPNLEIV THALADRILF DGKRASGVTY
LRGSERANAH ARREVLVCSG AIASPQLLQR SGVGPGAWLK ELDIPIVLDL PGVGQNLQDH
LEMYIQYECK EPVSLYPALK WWNQPKIGLE WMLNGTGLGA SNHFEAGGFI RTRDDDPWPN
IQYHFLPVAI NYNGSNAIEM HGFQAHVGSM RSPSRGRVKL RSRDPNAHPS ILFNYMAEAL
DWREFRDAIR ATREIMRQPA LDRYRGRELN PGADCKSDKE LDTFVRSRAE TAFHPSCSCK
MGYDDMAVVD EEGRVHGLEG LRVVDASIMP IITTGNLNAP TIMIAEKIAD KIRGRQPLAR
VDVPYFVANG AMARNVAKAV RQPETV
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