| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_5029 |
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| Symbol | |
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| ID | 6179811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2192860 |
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| End bp | 2194680 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641684781 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001811691 |
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| Protein GI | 172064040 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.145963 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCGA TGGAACGCAT CATGAAATCG GAGCAACCGG CGCGCGCCGG GCAGGGTGCC
TGGACGATGC TCGCGGCGGC CGCGCTGCTG GCGCTGAGCG GTTGCGTGCC GTCGGGATTC
CTGCCGTCGC TGTCGCTGCG CGCACCGGCC GGCGACGCGC TCGCGCATAC CGCGGGCCCC
GGCGTGGACG GGGCGTGGCC CGCCCCCGAC TGGGTCAAGC AACTGCAGGA TCCGCAGCTC
GACGAACTGG TGGCGGAGGC GTCGCGGAAC AATCCCGACC TGCAGGTCGC GCAGGCGCGG
CTGCGGATCG CGCAGGCGCA GCTTCGGCAA TTCGATTCGC TGACGGGGTT GACCGGCACG
GCCGGCGCGA CGGTCAGCCG CGCGCGGATG CCGAAGCCGG GCGACGTCGC CGACGTGTCC
GTCGGCGGCT ATCGCGTGCC GGTCGAGATC TTCGGCGATC CGGTCGTGTC GCCGTCGTCG
GTATTCGTCG GGCTGACCTA CCAGCTCGAC CTGTGGGGAA GGAACCGCGC GGCGACGAAG
AGCCTGATGT CGCTGCGCGA CGCGGCCGGC GTCGAGGCCG AGCAGGTTCG GCTCACGCTA
GCGGTCGCGA TCGTCTCCGT GTATTGCCAG CTCGACCAGG CGTACGCGGT GCGCGACCTG
CTGCAGCAGA AGCTGAAGAT CAGCCAGCGC GTGACGGCCG TGCTGCGCGA GCGCACCGCG
CGCGGCCTCG ACAACGCGTA CGACGCGAGC GACGCGTCGA TCAAGCGCAC CCGCCTGCTC
GAACAGATGG CGCTGAACGA CGAGCAGATC AAGCTCGCGC AATTGCAGCT CGGCGTGCTG
TCCGGTCGCG GGCCCGAGCG TGGGCTCTCG CTGCAGCGGC CGCGCGTCGG CGCTTTCCCC
GGCGGCGCGC TGCCCGCGCG GCTGCCGGCC GACCTGCTCG GCCGCCGGCC CGACATCGTC
GCCGCGCGCC TGCGCGTCGA AGCGGCGTTC GCGAATGCCG ACTCCACGCG CGCGCAGTTC
TATCCGGACG TGAACCTCGT CGCGCTCGGC GGCGTGTTCG CGCTGACACC CGCGTCGCTG
TTCTCGCGCG ACGCACTCGC CGGCTCCGTC GGCCCGGCGA TCTCGCTGCC GGTGTTCGAT
CGCGGCCGGC TGAAGGCGAA GCTCGGCGCG GACGTCGCGC AGGCCGACGT CGCGATCGGG
CTGTACAACA AGACCGTCGA CGACGCGCTC GGTCAGGTCG CACAGATCGT CACGTCGTTG
CAAACTGCGC AGACGCTCGT CGCGCAGCAG CAGGACGCCG TCGCCGCCGC GCAGAAGATC
GTGCAGATCG CGGCCGACCG CCATCGGCGC GGCGTGCTGA TGCAGAAGGA CGTCGATGTC
GCGGACCTCA CGCTGATCGA TGAACGCGCG CAGCTGATCG CGCTGCTCGG GCGGCAGCGG
ACGCTGCGCG TCGGGTTGGT CGGCGCGCTC GGCGGCGGGT TCGATGCCGG TGCGGCGATG
GCGTCGGCAT CGACATCGAC GTCACCGGTC GCGACACGTA CCGCGCAAGG CCCGCGGCCG
AAGCGCGGCG CGATGGCGAA CGCGGCCGCT CGCAACGCGA CGACCGCCGG CACGGAAGCG
CGTCGCGCGG CGACCGCCGC CAATGGCGCC GCGCCAATCG ACCCGCCGGC GGCGCTCGTG
ACACCGCGCA GCGCGGCGGC CGATAGCGCG AGCGTGAGCA CCGGCACGCG CGGCGCGGTA
CCCATCGTCT CGGCCGACCC GCGCATGAGC GCGATCCCGC AGTTCCAGCA TGACCGCCTG
ATCGTTACGC AAAGCGACTG A
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| Protein sequence | MEAMERIMKS EQPARAGQGA WTMLAAAALL ALSGCVPSGF LPSLSLRAPA GDALAHTAGP
GVDGAWPAPD WVKQLQDPQL DELVAEASRN NPDLQVAQAR LRIAQAQLRQ FDSLTGLTGT
AGATVSRARM PKPGDVADVS VGGYRVPVEI FGDPVVSPSS VFVGLTYQLD LWGRNRAATK
SLMSLRDAAG VEAEQVRLTL AVAIVSVYCQ LDQAYAVRDL LQQKLKISQR VTAVLRERTA
RGLDNAYDAS DASIKRTRLL EQMALNDEQI KLAQLQLGVL SGRGPERGLS LQRPRVGAFP
GGALPARLPA DLLGRRPDIV AARLRVEAAF ANADSTRAQF YPDVNLVALG GVFALTPASL
FSRDALAGSV GPAISLPVFD RGRLKAKLGA DVAQADVAIG LYNKTVDDAL GQVAQIVTSL
QTAQTLVAQQ QDAVAAAQKI VQIAADRHRR GVLMQKDVDV ADLTLIDERA QLIALLGRQR
TLRVGLVGAL GGGFDAGAAM ASASTSTSPV ATRTAQGPRP KRGAMANAAA RNATTAGTEA
RRAATAANGA APIDPPAALV TPRSAAADSA SVSTGTRGAV PIVSADPRMS AIPQFQHDRL
IVTQSD
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