| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4980 |
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| Symbol | |
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| ID | 6180347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2132049 |
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| End bp | 2133002 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641684732 |
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| Product | choline ABC transporter, periplasmic binding protein |
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| Protein accession | YP_001811642 |
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| Protein GI | 172063991 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.495132 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCGA CAAAGATCGC CGCGTTCGTC GCGGCCATGC TGGCGACCGG CGCGTTCGCG
ACCGCGGCGC AGGCCGAAAC GGATGCCGCG ACCTGCCGCA CTGTACGCTT CGCGGATATC
GGCTGGACCG ACATCACGTC CACGACGGCG CTCGCGTCGA CGGTGTTCGA GGGGCTCGGC
TACAAGCCGA CGACGACGAT TGCATCGGTG CCGATCTCGT TCGCCGGCCT GAAGAGCAAG
CAGCTCGACG TGTCGCTCGG CTACTGGTGG CCGGTGCAGC AAAAGCAGCT CCAGCCGTTC
CTCGACAACA AGTCGATCAA CGTGGTCGAG CCGCCGAACC TGTCGGGCGC GAAGGCGACG
CTCGCGGTGC CGAGCTATGC ATACCAGGCC GGCCTGAAGA CCTTCGACGA CATCGCGAAG
CACCGCGCCG AGCTCGACGG CAAGATCTAC GGGATCGAGC CGGGCAGTAG CGCGAACGCG
ACGATCCAGA AGATGATCGA CACGAACCAG TACGGCCTCG GCGGCTTCAA GCTGGTCGAA
TCGAGCGAGG CGGGGATGCT CGTCACGGTC GAGCGCGCGA TCCGCGAGAA GAAGTGGGTT
GTCTTCTTGG GATGGGAACC GCATCCGATG AACATCCAGA TCAGCATGAA CTACCTGTCC
GGCGGCGATG CGTCGTTCGG CCCGAACTAT GGCGAAGCAC GCGTGTACAC GCTGACGGCG
CCCGACTTCA TCTCGCGCTG CCCCAACGCG GGCAAGCTCG TCGAGAACCT GCGCTTTTCG
ACGCAACTCG AGAACCAGCT GATGCAGTCG GTGATGAACA AGACGAAGCC GGCCGACGCC
GCGAAGGCGT ACCTGAAAAA GAATCCGCAG GTGCTCGATG CCTGGCTCGC CGGCGTCAAG
ACGTTCGACG GCAAGGACGG CCTGCCTGCC GTGAAGGCCT ATCTCGGCCT GTAA
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| Protein sequence | MKSTKIAAFV AAMLATGAFA TAAQAETDAA TCRTVRFADI GWTDITSTTA LASTVFEGLG
YKPTTTIASV PISFAGLKSK QLDVSLGYWW PVQQKQLQPF LDNKSINVVE PPNLSGAKAT
LAVPSYAYQA GLKTFDDIAK HRAELDGKIY GIEPGSSANA TIQKMIDTNQ YGLGGFKLVE
SSEAGMLVTV ERAIREKKWV VFLGWEPHPM NIQISMNYLS GGDASFGPNY GEARVYTLTA
PDFISRCPNA GKLVENLRFS TQLENQLMQS VMNKTKPADA AKAYLKKNPQ VLDAWLAGVK
TFDGKDGLPA VKAYLGL
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