| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4960 |
|---|
| Symbol | |
|---|
| ID | 6179826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 2110942 |
|---|
| End bp | 2112282 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641684712 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001811622 |
|---|
| Protein GI | 172063971 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.554381 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAATT CCAACGGCAT CCCCACGCCG CGCGGCATGC AAACCGGCTC GGACCCGCAC
GCGGATGCCA CCGCGCCCGG CATCGACGCG CTGTATACGC GCGTGAGCCG ACGCATCATT
CCGCTGATCC TTGTTTGCTA CTTCTTCGGC TATCTCGACC GCGTCAACGT CGGCTTCGCG
AAGCTGCAGA TGGTGACGGA CTTGCATCTC ACGGACGCTG CCTACGGCGT CGGCGCCGGT
CTGTTCTTCG TCGGCTACCT GCTGCTGCAG GTGCCGGCCG GCTGGCTCGT GCGACGGATC
GGCGTGAAGC GTTGTCTCGC CGGCTCGATG CTGACGTGGG GCATCGTGTC GGTCGCCACG
CTCGCAACCC GGGACACCGC GAGCTTCTAT GTACTGCGCT TCCTGCTCGG CGTAACGGAA
GCGAGCTTCT TTCCGGCCGT GATCGCCTAC TTCAGCGTGT GGTTTCCGTC GCACCGGCTC
GCCAAGGTGA TGGCCTTCCT GTTTCTCGCC ATGCCGCTGG GCGTGATCGT CGGCGGGCCG
CTGTCGGGCT GGATCATGGA CGCGACGCAT GGCGGCTTCG GGCTGCGCGG CTGGCAGTGG
ATGTTCCTGA TCGAAGGCCT GCCGGCCATC ATGCTCGGCA TGGTCCTGCT CGTGCGTGTA
ACGGAGCGGA TCGACGATGC AGCGTGGCTG ACCGACGCCG AAAAACGGAT GATTCGCGCG
GAGATGGCCC AGGAAGCGAC AGGCAAGCGC ACCCGCCTCG GCGCCGCGCT GCGCGAACCG
ACGCTATGGC TGCTGTTCGC GACATCGTTC CTCTACAACG TCGGCAACTA TGGGCTGGTG
TTCTGGATGC CGACGATGAT CAAGGCACTC GGGTCGCTGA GCAACCTCGG AATCGGCCTC
GTCAGCGCCA TTCCGTATCT GGTCGCGTCG GTCGCGATGG TCGCGAACGC GCAGCATTCG
GTACGAACCG GCGAGCGCCG CTGGCATACG GCGCTGCCCG TCGCGATCGG CGCCGTCGCG
CTGCTCGCGA GCCTCGGCAT GCGCACGCAT CCGGTGCTCG CCGTCATGTG CCTGACCGCA
GGCGTGGCGG GCATCATGAG CACGCTCGCG ATGTTCTGGA GCTTGCCGTC GCGGATTCTC
GCCGGCGAGG CCGCCGCGGG CGGCGCCGGG CTCGTCAACA TCGGCGCGGC CGTCGCCGGG
TTCGTCGGAC CGACGCTGAT GGGCTACGCG ACGGGATGGA CCGGCAGCAC TGAACTCGGC
GTCGCGCTGC TCGCTTTCAC GCTCTTCGCC GCCGCCGCGC TGATCCTGTC GATTCCGCGC
CAGCTCATGG TGCGCACGTG A
|
|---|
| Protein sequence | MTNSNGIPTP RGMQTGSDPH ADATAPGIDA LYTRVSRRII PLILVCYFFG YLDRVNVGFA
KLQMVTDLHL TDAAYGVGAG LFFVGYLLLQ VPAGWLVRRI GVKRCLAGSM LTWGIVSVAT
LATRDTASFY VLRFLLGVTE ASFFPAVIAY FSVWFPSHRL AKVMAFLFLA MPLGVIVGGP
LSGWIMDATH GGFGLRGWQW MFLIEGLPAI MLGMVLLVRV TERIDDAAWL TDAEKRMIRA
EMAQEATGKR TRLGAALREP TLWLLFATSF LYNVGNYGLV FWMPTMIKAL GSLSNLGIGL
VSAIPYLVAS VAMVANAQHS VRTGERRWHT ALPVAIGAVA LLASLGMRTH PVLAVMCLTA
GVAGIMSTLA MFWSLPSRIL AGEAAAGGAG LVNIGAAVAG FVGPTLMGYA TGWTGSTELG
VALLAFTLFA AAALILSIPR QLMVRT
|
|---|
| |