| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4953 |
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| Symbol | |
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| ID | 6179806 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2102396 |
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| End bp | 2104516 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641684706 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001811616 |
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| Protein GI | 172063965 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.836014 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTCG CTCCGAACGG GGGTATTCCC AACGGTTTGG GCGGTGGTGC GCTCGGATCC
CTGAGCGCGC TCGGCGGCCT TGCCGCGCCG ATCGCGTCGA GTGTTGCCGG GAGCGTTGGG
CCGCTTGCCG GCCTGGCCGG GCACGTCGAC ACCGTCCAGC GCGCGATGCA GCTCGCGCAA
ACCGGTTTCT CGCTGATGGA CAAGACGCCC GGCGCGATTG CCGAGGCGAT CAACGGCGCA
GCCAACCCCG CGCGCCTGAC CCAGCTCAAT CGTTACGTGA CGCTCGATAC GCCGCTTGGC
CCGGACGTGC TGCTGGTGAG CGCGGCCGTC GTCGACGAGT ACGTGAACCG GTTGCCGGAA
ATCCATCTCG ACCTGCTGTC GCATCGCCAC GACCTGCGCC CGGACGACCT GATCGGCCAG
CAGGTCAAGA TCCGGTTCGA CCAGCAGGCG CGCTTGTCGA CGCTCGAGCG CGTCGTGGCA
GCGGGCACCG GCGAGAACGA CCGTTACTTC GACGGCTACG TCGCGTCGTT CGACCGGGCC
GGCAACCCCG GGAATGTCAC GCAGTATCAC CTGACGGCCG TGCCGTGGTT CTGGTTCCTG
ACGCGTTCGA CCGACTGCCG GATTTTCCAG AACAAGACCG CGCAGGACAT CCTCACCGAG
ATTTTCCAGG AGCACGGGTT TTCCGACTTC GTGTTCGATA TCCGGACGAG CCAGAAGCCG
CTCGAGTACG TGGTGATGTA CCAGGAGTCT TACTACAATT TCTGCGCGCG GTTGATGGAG
CAGGAGGGTT TGGTCTGGAC GCACCGCTAC GAGAAGGACA AGCACTTTCT CGTGATCGGC
GACACGAACC TGCTGTTCCG TCCGATCGAC GGGCTGGCCA CCGTGCCGTT CGCCGCGACC
GAGGCGAGCG AAGACAGCGG TATCGACCAA CTGCACGAAG GCCGGCGCTT CGGTGTCGGC
AAGGTCACGT TTCGCGACTT CAATTATCAG AATCCGTCGT CGCCGCTGAT GCTGGTGGAA
GCCGAGCCGC AGAACCTCAA GCATGCGCGG CTCGACGCGA CCGAACGGTT CGAGCACCAG
TCGCTGTACG ACCACGGCGA CGATGGCAAT CGCTACGCGC GTTTCGCGAT GGAAGCCGAA
GAGGCGCAGG CCCATCGCTA TACCGGCGGC GGCTATGCGT GGCGCATGAC GACGGCCGGC
GCCGTGACCG TGGCGAATCA TCCGGTTCTC GAGAACAACC AGGAATACGT GATCCTGCAC
GTGCGTCACG AGGCGGTGAA CGACTACACG CAGCACAGCG CAAAACTGCC GTACCGCAAC
AGCTTCGCGC TGTTGCCGAA GAAGATTCCG TACCGCGCGC CGCGTGCGAC GCCGAAACCG
GTGATTCACG GCACGCAGTC GGCGATCGTC GTCGGTCCGA AGGGCGAGGA GATCTATACG
AACGGGAGCG CGGTGAAGGT GCACTTTCCG TGGGATCGAC GCGGCAAGAA GGACGGCTCC
GACTCTATGT GGGTGCGCGT GTCGCAACCG TGGGCGGGCG ACGGCTGGGG TGCGGCGGCG
ATTCCGCGGA TCAAGCAGGA AGTGCTCGTG GCATTCAATC AGGGCGATCC GGACAACCCG
GTGATCGTCG GCCGCGTGTT CAACGGCGAG CAAGGCAACC CGTATCACGG CGCGGGCGGC
CAGACGATGG GGATCAAGAG CCAGACGCAT AAGGGGCAGG GGGGCAACGA GTTGCTGATG
AGCGACGTCA ATGGTGCGCA GATGCTCTAC ATGCATGCGC AGAAGGACAT GCATACCGTT
GTCGAGGACG CGCAATGGAC TCAAGTTCTT AAAGGCGACC GGACCGTCGA GGTCGGGAAG
GGCAACCATA CGACATCCAT CGCGGTCGGC AATCTGTCGG ACGTTGTCGC GCAGGGCAAT
ACGTCGCATC AGACTCCGCA AGGTGTGCAT ACGCTCGAAG CCAAGGAACT CTGGATCAAG
ATCGGTGGCG ATGGCGGCAC GCGGATTCAC ATGACGGCTG ACTCGATCGA CATTTATAAG
GGCGAGTCGG TGATTCACCT CGACGATAGC AACATCAATA TCCAGGCATC CCGAACCGAC
ATCAATCCGA AGAACGGCTA A
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| Protein sequence | MSFAPNGGIP NGLGGGALGS LSALGGLAAP IASSVAGSVG PLAGLAGHVD TVQRAMQLAQ
TGFSLMDKTP GAIAEAINGA ANPARLTQLN RYVTLDTPLG PDVLLVSAAV VDEYVNRLPE
IHLDLLSHRH DLRPDDLIGQ QVKIRFDQQA RLSTLERVVA AGTGENDRYF DGYVASFDRA
GNPGNVTQYH LTAVPWFWFL TRSTDCRIFQ NKTAQDILTE IFQEHGFSDF VFDIRTSQKP
LEYVVMYQES YYNFCARLME QEGLVWTHRY EKDKHFLVIG DTNLLFRPID GLATVPFAAT
EASEDSGIDQ LHEGRRFGVG KVTFRDFNYQ NPSSPLMLVE AEPQNLKHAR LDATERFEHQ
SLYDHGDDGN RYARFAMEAE EAQAHRYTGG GYAWRMTTAG AVTVANHPVL ENNQEYVILH
VRHEAVNDYT QHSAKLPYRN SFALLPKKIP YRAPRATPKP VIHGTQSAIV VGPKGEEIYT
NGSAVKVHFP WDRRGKKDGS DSMWVRVSQP WAGDGWGAAA IPRIKQEVLV AFNQGDPDNP
VIVGRVFNGE QGNPYHGAGG QTMGIKSQTH KGQGGNELLM SDVNGAQMLY MHAQKDMHTV
VEDAQWTQVL KGDRTVEVGK GNHTTSIAVG NLSDVVAQGN TSHQTPQGVH TLEAKELWIK
IGGDGGTRIH MTADSIDIYK GESVIHLDDS NINIQASRTD INPKNG
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