| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4951 |
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| Symbol | |
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| ID | 6179804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2097457 |
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| End bp | 2101944 |
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| Gene Length | 4488 bp |
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| Protein Length | 1495 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641684704 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001811614 |
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| Protein GI | 172063963 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.746977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGACA CGCCGAATTA CAACGAGCCC AGCGGCAGCG CACAAGAACG TCTCGATCAG
ATCGCCAAGC TGGAAGACGG TGAAGCCGCC AAAGCGGCCG AGCAGCCGTT TTACGAGAAT
CTCAACTATG GGATGCTCGG TGCCGATGCA GGCCTGACCG CGATTGAGGG GACCGCCGCC
GGGTTGGGTG CGGCGGGTAC GGCGTTGGCA GGCGGTGCAA CTGGTGGAGC GGCATTGGGC
GCAGGTGCGG TCGCCGCGGG TACGGTGATG CTGCCGCTCG CGATTGCAGT CGGCGGAGCT
TGGGCGCTCG ACAAAGTCGG TGTTACCGGC TGGCTCTCAA AGGAGTTTAC GCAGGTCGGT
GACGCACTTG GCCTCACAAT CGGCCGCGGC GATCCACACC CCGCATGCAT TGGCGACCGG
ATTGCACACT CGTCGGGCTT CATGGGAATC CTCGCCGGTA TCGCCGTGGG GGTCGCGATC
GGCGTGGCGG TGGCAGCCAC CGTGGCGACG GGAGGACTCG CCGGGGCGTT GATCGTCGGG
GCGTGCTTGG CGGGCGGCCT GACTCTCGGT GGCGCACTTG CGTCTGCCAG CCAAAGTATG
GGCAGTAACT GTGGTGAGAT TGTCACCGGC TCGGGCGATG TGTACTTTGA AGGCAAAAAG
GTGGCGCGCG TCACGGACCT GGTGAAATGC GATCACCATT CCGGCGTGCC GCAGCCACTC
GTCGATGGCA GCAAGACAGT GTTCGTCAAC GGCCTGCCGC TGGTACGGAT CGGTCACGAG
ACTCACTGTA GCGGCAAGGT CAATTCGGGG CGCAACAGTA TCTGGATCGA CAAGACGACT
GGGCACTATG GCCCGAAGAA CCCGGAGTTG ACCGCGACTC AGGAATTCCT GGCGGGGTTG
CTCGGCGGGA TTGTAGGCGG CGGAGTCGGA AAATTTGCCG GCAAGGGGAT GCGCGAAAAA
TTCAGGCCGG AGCCGACCCG GTCCGCTGAA CAGACGGGCA TCAGGGATGA GAACCGACCG
AAGTGCAAGG ATCCGGTTGA TCCGGTATCC GGTGAAATGC TGGAAATCCG CATGGACCTC
GCCATTCCCG GCGTCCTGCC GCTTGAGTTC AAACGACGCT ATCGGACTCG GTCGGACGAT
CATGGATTGC TCGGTCACCG CTGGTCGGAC AACTGGTCGC AGCATTTGAC ATTCGGCGGT
GGTCGCTTCG TCAGATTTCA CGATGGAGCG GGTCTTGCGA TCGGCTTCGA CGCGCCGGAC
ATGGCGCTCA ACGGCATCAA CTTGCGCGAA CCGCGCTATC GGCTGGTCGG AAGCCGACTT
GAACCGCGGA TCTTCGATCG CGATACGCGG CAACTGCGTA TTTTCACGCC TCTTATCGAC
GGAGGGTCTT CGCGCCTCGA GCGGATCGAG GACCTCGACG GTAACGCAAT CGTTCTTTCC
TACGATCCTG CTGGCCGTTT GAGTGGCATG GCCCATAGCG ATGGCTATCG GCTTGAGATT
ACCTATCCCG GGCGCGACCG GCGGCTGCAA CGGATCGTCC TCCACGATGC GGACGGGAGT
TTCCGAACAC TCGTGGACTA CGACTACCAG AACGGCATGC TTACCCACGT GGCGAGCTTC
CAGTTTGGGC AGTTCCATTA CGCGTACGAT GCGCACGGCT GGATGACCCA ATGGCGGGAT
ACTGACCAGA CCGAAGTCCG ATATCAATAC GACACCGCCG GCCGTGTAGT CGAGACCGGT
ACACAGCAGG GCTATCACAC GGGCCGGTTC ATCTACGAAG CCGGCCGCAC TCGCGTGATC
GATGTCGACG GCGAATGGAC CTACAACTAT GACGACGAAG GTCTTGTAAC GGCCGAAACC
GATCCGCTTG GCCATTGCAC TCGCTCGGAA TGGGAGCTCG GTCGTTTGAT GGCACGGACC
GATCCGCTTG GACGACGGAC CGACTATCGC TATGGCGATC ACGGTCAGTT GATTTCGATA
GCTGACGTGT CAGGGCGAGC GACCCGGCTG GAATATGATG CCGAGCAGCG CTTCACCGGC
GCTACGCTGC CCGATGGTAG GCGGATCAAG CTCGACTACG ATCATCGGAG TCGATTAATT
TCGCGCACCG AGCCGGATGG CACCACGACG ACCTACCGCT ACGGATCGAA CGGTGAGCTG
TTGCGCATCG TTGTCGGTGA CCGCGAGACG CGCCTCGACT ACGACGAGCG GTTACGACTT
GCCGTCATCG AACTGCCGAC CGGTGCGCGC TTCCGGCGCA AGATCGACGT GTTGGGCCGG
GTGCTGCAGG AAACGTCGCC CGATGGCCAT GTGACCCGCT TCGACTATGC CGATGGACCT
GACAATCCGC GAGGTCTGCT GAGCGCGGTT ACGCGTCCCG ATGGCTCTGT GTGGCGAACC
CGATACAACA GCGAGGGTCT GCCGGTCGAA TGGACCGATC CGCTCGGCCG TACGATTCAG
CGAGCGTATG GTCCGTTTGA TTTGCTCACG GCGTCGATCG ACGCGGCGGG ACATGCCACG
CGTTTCGAGT ACGACCACGC GACCCGTTTG ACGAAGGTCA TCAACGCCCT GGGTGAATCG
TACACATACT GCTACGACGC GGCCGGTCGT CTCGTGGAAG AGATTGATTG GGGAGGCCGC
GAGACTCGGT ACGAGCGCGA TCCTGCTGGT CGCCTGATAA CCAAGACGTT GCCGGACGGT
GGTCAGTGGC GCTATTCGTA CGATGCGTAC GATAGGCTCG TCCAGGTAGA CGCGGGTGAC
GTGGGGCTTG CCTACCGTTA CGACGCGGCC GGGCGACTGG CATCGGCGGA AGTTCGAGGC
GAGCACCCTC ACGTGACCCG CTTTGCTTAC GATAGGAACG GACGGGTGAT CGGCGAGGAT
CAGCATGGCG AACTGTTGCG GCACGTCTAC GATCCTGCTG GACAGCGGCG CGTGCGGATG
ACGCCTCGTC GGGAAACGGA GTATGCATAT GATGCGTTGG GTGCCGTGAC ACAGGTGGGC
GGCCTAACGA TTCAGCGCGA CAGCCTGGGA CGGGAGATCG GTCGGCGAGC GGGGGAGTTT
GTTGCGCAGC AAGACTACGA CACCCTCGGC CGAATTCGCC GACAAATCGC GGGCCCTACC
GTAGCGTTCG ACGCCTTGCA AACCGATCCA GCCCGTGCGT TCGAGCAATT GACGCGGCAG
GTCTATCACT ACGACGCGGC CGGACAACTG GAGCGGATCG ATACCGACGC CGATAGGCTC
ACATACCGGC GTGATGCACG TGGCCAGATC GTCTCAGTGG AAAGTCTGCT ACAGACTGCC
GAGCACTTCC GTTACGACGC GGTGATGAAC ATTGCCGCGC ATGGGCGGCA AGCTCCCGTG
GATACGCATC ATTACGGCCG AGGGGGCTTG CCGGAGCGAA TCGGTTATGC GCGCTATCGG
TACGACGCAC GCGGCCGCAC AATCGAGAAG ACCCTCGAAC AGCCCGGGTT TCGGCCGAAG
ACGTGGCAAT ACACGTGGGA TGGCCTCAAC CGGATCGTAA AGGTCGTGAC ACCCGACCGT
GGCGTTTGGC TATACCGCTA CGATGCCTTC CATCGCCGGA TCGAGAAGCA GCAACTCGGC
GGTCGCGAAG CAGTGAAGTT GCTCTGGGAC GGTTCGACGC TAGCCGAGCG CTGGATTGAG
CAGCGGGACG GTACGACGGG ACAGGTGACG ACGTGGCATA TCGAGCCAGG AAGCTTCTCC
CCCTTGGCAC AGGAGACAAA TGATGGTCTC TACCCTATCT TGACCGATCA GGTTGGTCGG
GCGAAGGCGG TATTCGACGT GCGTGGCAAG ACGGTCTTCA AAGTGTCTCA TACGCTCTGG
GGGAGAGTGA TGCAGGTACG AGGCGCCGCT AACGACGACG ATGCCGTATC GATCGATGCG
ACATTGAGGT TTCCGGGACA ATGGTGTGAC GAGGAAACCG GCCTGCACTA CAACCTGCAT
CGCTATTACG ACCCGGACTC AGCGCAGTAC CTGAGCGTTG ACCCGCTCGG ACTTGCAGGC
GGATTCCGGA CCCAGGGCTA TGTTCATGAA CCCAGCCAGT GGGTCGATCC GTTCGGTTTA
CAGCAATGCC CGGAACGAGA AGTCAATGGA ACGAAGATAT ACGGCAAGGG GCAAAAGGAC
GGAACACCTG GACACGACCA GTTCTCAGAA GTGGTCGCTA ACAAGCTCGC GATGAGTGGG
AAATTCAAGG AAATCTATCT GAACCGATCC TACAATTTTG CGAGCGACAA TGCTGTTTCG
GCGCGGCGCC CCGATATTAT GGCTGTAGAC ATTAATGGGA GAGTGCATGC CATCGAAATG
GCGTCCCGGA CCGATATGGG TGCGAAATTG CGAACGCTAA CGACGCGAAA CTATGACGCG
ATGCAAAATC TTCCGCCGAA TGCGCGAGGG GATATTCTTG TGTTTGAACA TCCGTATGAT
GCGCAATCGA TAAAGACTGA TCTGGATAAT TTAATATCGG GAATCTGA
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| Protein sequence | MSDTPNYNEP SGSAQERLDQ IAKLEDGEAA KAAEQPFYEN LNYGMLGADA GLTAIEGTAA
GLGAAGTALA GGATGGAALG AGAVAAGTVM LPLAIAVGGA WALDKVGVTG WLSKEFTQVG
DALGLTIGRG DPHPACIGDR IAHSSGFMGI LAGIAVGVAI GVAVAATVAT GGLAGALIVG
ACLAGGLTLG GALASASQSM GSNCGEIVTG SGDVYFEGKK VARVTDLVKC DHHSGVPQPL
VDGSKTVFVN GLPLVRIGHE THCSGKVNSG RNSIWIDKTT GHYGPKNPEL TATQEFLAGL
LGGIVGGGVG KFAGKGMREK FRPEPTRSAE QTGIRDENRP KCKDPVDPVS GEMLEIRMDL
AIPGVLPLEF KRRYRTRSDD HGLLGHRWSD NWSQHLTFGG GRFVRFHDGA GLAIGFDAPD
MALNGINLRE PRYRLVGSRL EPRIFDRDTR QLRIFTPLID GGSSRLERIE DLDGNAIVLS
YDPAGRLSGM AHSDGYRLEI TYPGRDRRLQ RIVLHDADGS FRTLVDYDYQ NGMLTHVASF
QFGQFHYAYD AHGWMTQWRD TDQTEVRYQY DTAGRVVETG TQQGYHTGRF IYEAGRTRVI
DVDGEWTYNY DDEGLVTAET DPLGHCTRSE WELGRLMART DPLGRRTDYR YGDHGQLISI
ADVSGRATRL EYDAEQRFTG ATLPDGRRIK LDYDHRSRLI SRTEPDGTTT TYRYGSNGEL
LRIVVGDRET RLDYDERLRL AVIELPTGAR FRRKIDVLGR VLQETSPDGH VTRFDYADGP
DNPRGLLSAV TRPDGSVWRT RYNSEGLPVE WTDPLGRTIQ RAYGPFDLLT ASIDAAGHAT
RFEYDHATRL TKVINALGES YTYCYDAAGR LVEEIDWGGR ETRYERDPAG RLITKTLPDG
GQWRYSYDAY DRLVQVDAGD VGLAYRYDAA GRLASAEVRG EHPHVTRFAY DRNGRVIGED
QHGELLRHVY DPAGQRRVRM TPRRETEYAY DALGAVTQVG GLTIQRDSLG REIGRRAGEF
VAQQDYDTLG RIRRQIAGPT VAFDALQTDP ARAFEQLTRQ VYHYDAAGQL ERIDTDADRL
TYRRDARGQI VSVESLLQTA EHFRYDAVMN IAAHGRQAPV DTHHYGRGGL PERIGYARYR
YDARGRTIEK TLEQPGFRPK TWQYTWDGLN RIVKVVTPDR GVWLYRYDAF HRRIEKQQLG
GREAVKLLWD GSTLAERWIE QRDGTTGQVT TWHIEPGSFS PLAQETNDGL YPILTDQVGR
AKAVFDVRGK TVFKVSHTLW GRVMQVRGAA NDDDAVSIDA TLRFPGQWCD EETGLHYNLH
RYYDPDSAQY LSVDPLGLAG GFRTQGYVHE PSQWVDPFGL QQCPEREVNG TKIYGKGQKD
GTPGHDQFSE VVANKLAMSG KFKEIYLNRS YNFASDNAVS ARRPDIMAVD INGRVHAIEM
ASRTDMGAKL RTLTTRNYDA MQNLPPNARG DILVFEHPYD AQSIKTDLDN LISGI
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