| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4922 |
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| Symbol | |
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| ID | 6180094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 2070609 |
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| End bp | 2072498 |
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| Gene Length | 1890 bp |
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| Protein Length | 629 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641684674 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_001811585 |
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| Protein GI | 172063934 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.330349 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCAAC CTTTCGTGCT GCCCGCCACC GCGGGCCGCA ACGACCTGCT CGCGCAGGCG
CATGCCCGTT CGACCGCGGT CGGCCTGCGC GCCAACGAGC GCCCCGATTT CTCGCCGCTG
TCGCGCGTCG CGCTGCGCGA ACTGCTCGAC ACGAACCACG CCCTGTTCGC GCACGCGCGC
CCCGTGATGG AGAACCTGCA CGCGCAGATC GCCGACACGC AAAGCCTCGT GCTGCTCACC
GATGCCGACG GCGTGATCCT GCACAGCATC GGTGACGCGG ACTTCATCGA GAAAGCCAAC
CGCGTCGCGC TGTGCACCGG CGTTTCGTGG GCCGAAGGCG CGCGCGGCAC CAACGCGATC
GGCACCGCGC TCGCGTCGGG CCAGGCGCTC GCCGTGCATG GGTCCGAACA TTTCCTGCGC
GCGAACCATA TCCTCACCTG CTCGTGCGCG CCGATCATCG ACCCGTTCGG CCGCACGCTC
GGCACGCTCG ACGTGAGCGG CGACCCGCGC GGCTTCAGCC CCCATACGCT CGCGCTCGTG
CGGATGTCCG CGCAGCTGAT CGAGAACCAC CTGTTCGCGA ACCAGTGCGC GGAAGCGCTG
CGGCTGCGCT TCCATGCACA CGAGGATTGC GTCGACTCGC TGTTTGCCGG GCTCGTCGCG
TTTGGCCCCG ACGGCGGGCT GATCGCCGCG AATCGCAGCG CGCAATTCCA GCTCGGCGCC
ACGTTCGATG CGTTGCAGCA TCACGGCTGC GACGCCCTGT TCGGCATGCA CTTCGGCCAG
CTCGCGCAGC AGGCGGCCCG CGCCGCCGGC GCCCCGTTCC GCCTCACGCT GTCGACCGGC
GTGCGCGTGC TCGCGCGCTG CGAATTCGCG GAAGCGCACA AGACGGCGAT CGCCGTCTCG
CCGCCAGCCC CCGCCGTGCG CATGCGCGCG CCGGACCCCG ACGCCGTCAC GTTCGCGACG
CTCGACACCG GCGATGCGCG GATGGCCGCC GTGCTCGAAC GCGTCGCGAA GATCCGCGGG
CGCGACCTGC CGCTGCTGAT CCTCGGCCAG ACCGGCACCG GCAAGGAATG GCTCGCGCGT
GCGCTGCATC AGGCGTCGCC GCGCGCGGAC GGCCCGTTCG TCGCGGTCAA CTGCGCGGCG
CTGCCGGACT CGCTGATCGA GGCCGAATTG TTCGGCTACG AGGACGGCGC GTTCACCGGC
GCGCGCAAGC GCGGCAGCCC CGGCAAGATC GCGCAGGCCG ACGGCGGCAC GCTGTTTCTC
GACGAAATCG GCGACATGCC GCTCGCGCAG CAGGTCAGAC TGATGCGCGT GCTGCAGGAG
CGCGCGGTGA TGCCGCTCGG CGGCGCACGC GCGGTGCCGG TCGACGTGCG TGTGGTCTGC
GCGACCCACC GCGACCTGCG CGCGATGATA GCGGCGGGCA CGTTCCGCGA AGACTTGTTC
TACCGGATCA ACGGACTCGC GGTCACGCTG CCGGCGCTCG CCGCACGCAC CGACCTGCCC
GCACTGGTCG AGCGGATCCT CGCGCGGCTC GCCCGCAGCG AACCGATGCC GGGCCGCGTC
GCGGCCGACG TGCTCGAGGC GTTCATGCGG CACCGCTGGC CCGGCAATCT GCGGCAAATG
ACCAACGTGC TGCGTACGGC CGGCATGCTC GCCGAGGACG AACCCGAAAT CACGCTCGCG
CACTTGCCCG ACGATTTCTG GCTCGACTGC GACGACTCGC CCGCGGCGAA AGCCGCACCG
GCCGATACGC GCGCAACGAC GACGCTGCAG AGCCATCAGG CCGCGGTGAT CGACGCGGTG
CTCGCGCGGC ATGGCGGCAA CGTATCGGCC GCCGCGCGTG AGCTCGGGCT CGCGCGCAAT
ACCGTGTACC GTTACCTGCG GCGACACTGA
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| Protein sequence | MPQPFVLPAT AGRNDLLAQA HARSTAVGLR ANERPDFSPL SRVALRELLD TNHALFAHAR
PVMENLHAQI ADTQSLVLLT DADGVILHSI GDADFIEKAN RVALCTGVSW AEGARGTNAI
GTALASGQAL AVHGSEHFLR ANHILTCSCA PIIDPFGRTL GTLDVSGDPR GFSPHTLALV
RMSAQLIENH LFANQCAEAL RLRFHAHEDC VDSLFAGLVA FGPDGGLIAA NRSAQFQLGA
TFDALQHHGC DALFGMHFGQ LAQQAARAAG APFRLTLSTG VRVLARCEFA EAHKTAIAVS
PPAPAVRMRA PDPDAVTFAT LDTGDARMAA VLERVAKIRG RDLPLLILGQ TGTGKEWLAR
ALHQASPRAD GPFVAVNCAA LPDSLIEAEL FGYEDGAFTG ARKRGSPGKI AQADGGTLFL
DEIGDMPLAQ QVRLMRVLQE RAVMPLGGAR AVPVDVRVVC ATHRDLRAMI AAGTFREDLF
YRINGLAVTL PALAARTDLP ALVERILARL ARSEPMPGRV AADVLEAFMR HRWPGNLRQM
TNVLRTAGML AEDEPEITLA HLPDDFWLDC DDSPAAKAAP ADTRATTTLQ SHQAAVIDAV
LARHGGNVSA AARELGLARN TVYRYLRRH
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