| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4910 |
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| Symbol | |
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| ID | 6180938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 2060102 |
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| End bp | 2061889 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641684662 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001811573 |
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| Protein GI | 172063922 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities
[COG2267] Lysophospholipase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCTC TTTCCGACGA AGCGCCGCTG GCCCTGTTCG AATTGCTTCA TAGCGAGACG
GCCGTCGCCT CCGGCGACCT GACGCTCGCG GTCAGGACCT GGGGCGACCC GCCCCGCTCG
CCGGTCGTGC TCGTGCACGG CTATCCCGAC GACAGCAGCG TCTGGCAGCA CGTCGCGCCG
CTGCTCGCGC GCAAGCACTA CGTGATCGCC TACGACGTGC GCGGCGCGGG CCTGTCCGGC
GTGCCGAAGC GCACGGCCGA CTACCACCTC GCGAAGCTGA CCGACGACTT CATCGCGGTG
ATCGACACGC TCTGCCCCGG CCGCGCGGTG CACCTGATCG CGCACGACTG GGGCTCGATC
CAGGGCTGGG AATTCGTCAC GGATCCGCGG CTCGCCGGCC GCATCGCGTC ATACACGTCG
TGCTCGGGGC CGTGCCTCGA CCACGTCGGC TTCTGGCTGC GCGAACGCGT GCTGCGGCCG
ACGCCCGCAT CGTTGGCCAA GCTCGGCGGC CAGCTCGTGC GCTCGTGGTA CGTGTACGTG
TTCCACCTGC CGTTCATCCC CGAGCTGAGC TGGCGGCTGT GGCTCGGCCG CGCATGGCCG
GGCCTGCTGC GCCGGGTCGA GAAAACGCCG ATCGCCCCGC GCGCGACGCA GGCCGACGAC
GGCGCGCACG GCGTGCGCCT CTATCGCGCG AACTTCATCC GCTGTCTGTT CGCGCCGCGC
GAGCGCTACG CGCACGCTCC CGTGCAGACG ATCGTGCCGC TCGGCGACAA GTATGTGAGT
CCGGCGCTGT CGGAAAACCT GTCGCGCTGG GTGCCGCAGT ATTACCGGCG CGAAGTGGCG
GCCGGCCACT GGCTGCCGCT CGCCGATCCC GCGCGCTTCG CGGAGCTCGC CGAGCAGCTG
ATCGACGCGG TCGAATCGGG CGAAGAGCCG CCTGCGCTCG CGAACGCACG CCGGCGCGCC
ACCAGCGGCC GCTTCAGCGG CAAGGTCGTG GTCGTCACCG GCGCGGGCAG CGGCATCGGC
CGCTGCGCGG CGCTCGCGTT CGCCCGCGAA GGCGCGACCG TCGTCGCGTG CGATATCGAG
CTCGCGAGCG CCGAGCGCAC CGCGCTGCTG CTCGGGCTGA TCGGCGCGCA GGCCTACGCG
AAATGCGTGG ACGTCGGGTC CGCCGACGAG ATGGAAGCGC TCGCGACATG GGTCGGCAGC
GAACTCGGCG GCGCGGACGT CCTGATCAAC AACGCGGGCA TCGGCATGGC CGGCGGCATT
CTCGACACCA CCGCCCACCA CTGGGAGCGC ATCCTGCACG TGAACCTGTG GGGCGTGATC
CACGGCTCGC GGCTGTTCGC CCGGCAGATG GCCGCGCGCG GCACCGGCGG CCACATCGTC
AACACCGCGT CGGCCGCCGC GTTCGGGCCG TCGCGCGACC TGCCCGCATA CGCGACGACG
AAAGCCGCCG TGCTGATGCT CAGCGAATGC ATGCGCGCGG AACTCGCGGA GAAAGGCATC
GGCGTGACGG CCGTGTGCCC GGGCTTCGCG GAAACCGGAA TCATGGCGTC GACGCAATAC
GCGGGCGCCA ACGCTCAGGA CGAGGCACGG CTGCGCAAAC GCGCGACGAA GCTGTACCAG
ATGCGCGGCC TGAAGCCCGA GACCGTCGCG CAGGCAATCG TCGACGGCGT GCTGCGCAAC
CGGCCGGTCG TGGCGGTGGG CGCCGAGGCG CATGCGCTGC GCGTCGTCGG CCGCTTCATG
CCGTGGCTCG GCCGGATGCT CGCCCGCATC GGCATGGCAT CGCATTGA
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| Protein sequence | MQPLSDEAPL ALFELLHSET AVASGDLTLA VRTWGDPPRS PVVLVHGYPD DSSVWQHVAP
LLARKHYVIA YDVRGAGLSG VPKRTADYHL AKLTDDFIAV IDTLCPGRAV HLIAHDWGSI
QGWEFVTDPR LAGRIASYTS CSGPCLDHVG FWLRERVLRP TPASLAKLGG QLVRSWYVYV
FHLPFIPELS WRLWLGRAWP GLLRRVEKTP IAPRATQADD GAHGVRLYRA NFIRCLFAPR
ERYAHAPVQT IVPLGDKYVS PALSENLSRW VPQYYRREVA AGHWLPLADP ARFAELAEQL
IDAVESGEEP PALANARRRA TSGRFSGKVV VVTGAGSGIG RCAALAFARE GATVVACDIE
LASAERTALL LGLIGAQAYA KCVDVGSADE MEALATWVGS ELGGADVLIN NAGIGMAGGI
LDTTAHHWER ILHVNLWGVI HGSRLFARQM AARGTGGHIV NTASAAAFGP SRDLPAYATT
KAAVLMLSEC MRAELAEKGI GVTAVCPGFA ETGIMASTQY AGANAQDEAR LRKRATKLYQ
MRGLKPETVA QAIVDGVLRN RPVVAVGAEA HALRVVGRFM PWLGRMLARI GMASH
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