| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4902 |
|---|
| Symbol | |
|---|
| ID | 6180666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 2048951 |
|---|
| End bp | 2050480 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641684654 |
|---|
| Product | methylmalonate-semialdehyde dehydrogenase |
|---|
| Protein accession | YP_001811565 |
|---|
| Protein GI | 172063914 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01722] methylmalonic acid semialdehyde dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00679319 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0803346 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGA ATCCGACGCC CCGCACGGGG CAAGACGTGC CGACGGTCAA GCTGCTGATC
GACGGCGCTT TCCTCGAGTC CACCACGAGC GAGTGGCGCG ACATCGTCAA CCCGGCGACC
CAGCAGGTGC TCGCCCGCGT GCCGTTCGCG ACCGTCGCGG AAGTCGACGC GGCCGTGCAG
GCCGCGCAGG AGGCGTATGC GACGTGGAAG AACACGCCGA TCGCCGCGCG CATGCGCATC
ATGCTGAAGT TCCAGGATCT CGTGCGCGCG AACCTGCAGC GCATCGCGAA GACGCTGACC
GCCGAGCAGG GCAAGACGCT GCCCGACGCC GAAGGCGACA TCTTCCGCGG CCTCGAGGTG
GTCGAGCACG CGTGCTCGAT CGGCACGCTG CAGCTCGGCG AGTTCGCCGA AAACGTCGCG
GGCGGCGTCG ACACCTACAC GCTGCGCCAG CCGCTCGGCG TATGCGCGGG CATCACGCCG
TTCAACTTCC CCGCGATGAT CCCGCTGTGG ATGTTCCCGA TGGCGATCGT GTGCGGCAAC
ACGTTCGTGC TGAAACCATC CGAGCAGGAC CCGATGTCGA CGATGGAGCT CGTCGAGCTC
GCGATCGAGG CCGGCGTGCC GAAGGGCGTG CTGAACGTCG TGCACGGCGG CAAGGAAGTG
GTCGACGCGA TCTGCACGCA TCCGCTCGTG AAGGCGATCT CGTTCGTCGG TTCGACGGCC
GTCGGCACGC ACGTGTACAA CCTCGGCAGC CAGCACGGCA AGCGCGTGCA GTCGATGATG
GGCGCGAAGA ACCACGCGAT CCTGCTGCCC GACGCGAACC GCGAGCAGGC GATCAACGCG
CTGGTCGGCG CGGGCTTCGG CGCGGCGGGC CAGCGCTGCA TGGCGACCTC CGTCGCGGTG
CTGGTCGGCC GCGCGCGCGA CTGGCTGCCG GACATCGTCG CGAAGGCGCG GACGCTGAAG
GTCAACGCGG GCTCGCAAGC GGGCACGGAC GTCGGGCCGG TCGTGTCGCG CGGCGCCAAG
GCACGCATCC TGTCGTTGAT CGACGCGGGC ATCAAGGAAG GCGCGAAGCT CGAGCTCGAC
GGCCGCGACG TGAAGGTCGC CGGCTTCGAG GAAGGCAACT TCATCGGGCC GACGATCTTC
TCGGGCGTGA CGCCGGAGAT GACGGTCTAC ACCCATGAAA TCTTCGGGCC GGTGCTGGTC
GTGATGGAAG TCGACACGCT CGACGAGGCG ATCGCGCTCG TCAACGCAAA CCCGATGGGC
AACGGCGTGG GCATCTTCAC GCAGAGCGGC GCAGCCGCGC GCAAGTTCCA GAGCGAGATC
GACGTCGGCC AGGTCGGCAT CAACATCCCG ATCCCGGTGC CGGTGCCGTT CTTCAGCTTC
ACCGGCTCGC GCGGCTCGAA GCTCGGCGAT CTCGGCCCGT ACGGCAAGCA GGTCGTGCAG
TTCTACACGC AGACGAAGAC GGTCACCGCG CGCTGGTTCG ACGACGACAC GACGGCCGGC
CCGGTAAACA CGACGATCCG GCTGCATTGA
|
|---|
| Protein sequence | MNANPTPRTG QDVPTVKLLI DGAFLESTTS EWRDIVNPAT QQVLARVPFA TVAEVDAAVQ
AAQEAYATWK NTPIAARMRI MLKFQDLVRA NLQRIAKTLT AEQGKTLPDA EGDIFRGLEV
VEHACSIGTL QLGEFAENVA GGVDTYTLRQ PLGVCAGITP FNFPAMIPLW MFPMAIVCGN
TFVLKPSEQD PMSTMELVEL AIEAGVPKGV LNVVHGGKEV VDAICTHPLV KAISFVGSTA
VGTHVYNLGS QHGKRVQSMM GAKNHAILLP DANREQAINA LVGAGFGAAG QRCMATSVAV
LVGRARDWLP DIVAKARTLK VNAGSQAGTD VGPVVSRGAK ARILSLIDAG IKEGAKLELD
GRDVKVAGFE EGNFIGPTIF SGVTPEMTVY THEIFGPVLV VMEVDTLDEA IALVNANPMG
NGVGIFTQSG AAARKFQSEI DVGQVGINIP IPVPVPFFSF TGSRGSKLGD LGPYGKQVVQ
FYTQTKTVTA RWFDDDTTAG PVNTTIRLH
|
|---|
| |