Gene BamMC406_4889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4889 
Symbol 
ID6179120 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp2036170 
End bp2036805 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content66% 
IMG OID641684642 
Productisochorismatase hydrolase 
Protein accessionYP_001811553 
Protein GI172063902 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000690458 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAACCGG AACACGCTTC AGATCGCGCA GCCACTGACC ACGCAGGCAC GGACACCCAC 
ACGCACGCGC CGATTCCACC GATCGTGCCG GCGCAAACTG CGCTGGTCGT CATGCACTAC
CAGACCGACA TCCTCGGGCT TTTTCCGTCG GTCGCGCCTA CCCTGCTCGC CAACACGCGC
AAGCTGTGCG ACGCGGCGCG GGCCGGCGGC GTCCACGTCT GCTTCGCCAA TCTCCGCTTC
AGTCCCGGCT ATCCGGAAGT CAGTCCGCGC AACAAGAATG GCCAGGGGAT CAAGCAGCTC
GGCCTGTTCG TCGACGACGG CCCATGCCCG GAGCTCGGCC GGCTGGACAG CGAGCCGCTG
ATCGCCGCGC ATCGTGCGAG CGTGTTCTTC GGCACCGACC TGCAGGCGCG ACTCGTCGCG
CAGGGTATCG ATACGCTGAT CCTGGTCGGG ATTGCGTCGA CCGGCGTCGT GCTGTCGTCG
GTTGCGCACG CAAGCGATGC GGATTTCCGG CTGTATACGG TGAAGGACTG CTGCTACGAC
CCGGATCAGG TCGTGCACGA GCATCTGTTC GCGACGGCGT TCGACACGCG CACGACGGTG
CTGTCGCTCG ACGATGCGTT GCACTTGCTC GCGTAG
 
Protein sequence
MQPEHASDRA ATDHAGTDTH THAPIPPIVP AQTALVVMHY QTDILGLFPS VAPTLLANTR 
KLCDAARAGG VHVCFANLRF SPGYPEVSPR NKNGQGIKQL GLFVDDGPCP ELGRLDSEPL
IAAHRASVFF GTDLQARLVA QGIDTLILVG IASTGVVLSS VAHASDADFR LYTVKDCCYD
PDQVVHEHLF ATAFDTRTTV LSLDDALHLL A