Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4884 |
Symbol | |
ID | 6179500 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 2029433 |
End bp | 2031829 |
Gene Length | 2397 bp |
Protein Length | 798 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641684637 |
Product | patatin |
Protein accession | YP_001811548 |
Protein GI | 172063897 |
COG category | [R] General function prediction only |
COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000000395852 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAGCGA CCGCTACTCT CCGCTGGCTC GGGGTGCGCC GGATCGGCGC AACGCTCGTT GCGCTCTGGT GCTGCACCGT TGCCGCGCAG CCCTTGCCGG CCGCCGACAC CGCCACCCGC ACCGCGCCGG TGGCCGCTGC CGCCGCACCG AACGCCGCAC CCAACGCCAC GCCCGCGCCA ACCTGCACCG CCGACGGCGG CCCGGCGGGC CGGGCGCCGG TCGGCCTCGT GCTGTCCGGC GGCGGCGCGC GCGGCTACGC GCACCTCGGC GTGCTGAAGG TGCTCGAGGA GAACCGCATC CCGATCGACT GCATCGCCGG CACCAGCATG GGCGCCGTGG TCGGCGGCCT GTATGCGAGC GGCATGGCCG CCGACGAGAT GCAACAGCGG CTGTCCGAGG TGAACCTGGC CGACATCGCC TTCGACGTGA CCGACCGCGC GGACCTGCCG CAAACCAGCC GCGAGGACGA GCGCCTGTAT ATCAACAGCC TGACGCTCGG CTTCGGCAAG AAAGGCGTGA AGGCGCCGGT CGGCCTCGTC CAGGGCAACC GGCTGCAGGC GCTGCTCGCG AACTGGACGG CCGCCGTGCC GACCAACCAG CCGTTCGACC AGTTGCCGAT CCCTTATCGC GCGGTCGCGA CCGACCTGCA GACGGGCCAG ATGGTCGTGC TGGACCACGG CTCGCTGCCG CTCGCCATCC GCGCGAGCAT GGCGATGCCC GGCCTGTTCG CACCGGCCGA GATCAACGGC CGCGCGCTCG TCGACGGCGG GCTCGTCAGC AACCTGCCCG TCGACACCGC GCGGCGCATG GGGGCGAAGG TCGTGATCGC GGTCGACATC GGCTCGCCGC TGCGTCCGCT CGACGCGCTC GCGTCGCCGG CCGACGTGAT GCAGCAGATG GTCGGCATCC TGATCCGCCA GAACGTGACG TCGCAGCGCC AGCAGCTCGC CGCACAGGAC GTGCTGCTCA CGCCCGACCT CGGCGCGCTC GCGTTCACCG ATTTCCAGAA CGCGAAGCAG GCGATCGCCG CCGGCGCGGC CGCCGCGACC GCGGCGCTGC CGCGGCTCAA GCGCTTCGCG CTCACGCCGG AACAGTACGC GGCCTACCGG TCCGCCCATG CGCAGCCGCT GCCGCCGCCG ATCCGCATCA CGCGCATCGA GATCAAGACG AGCGGCGGCA TCCCGAAGCG GGTCGTCAGC GACGCGCTGC ACGTGAAACC GGGCGACACC TACGATCCGG CGACCGTGAG CCAGGACCTG CTCGGGCTGA CGACCGGCGG CAATTTCGAG AGCGTGACGC AGCAGATCGT GAGCCACGGC GACGAAAACG TGCTCGTGAT CGATGCGCGC GAGAAATACT GGGGGCCGAA CTTCCTGCTG TTCGGCGTCG GGATGTCGAG CAGTTCGACC GACGAAGGCG GCTTCCGCCT GCACGTCGGC TACCGGCGGC CATGGCTCAC CGAATCGGGG CTCGAATTCC GCGCGGATAC GACGATCGGC AGCGACCTGG TGTCCGCGCG CGTCGAATTG CGCCAGCCGT TGCCGGCCGC GTACGGTTTC TACATTTCGC CCTATGCGGA ATATCAGCGT CGCTACGTGA ACCTGTACGA CGACAGCGGC GAGGTGAAAC TGAACCAGTA TCTGATGCAG ACGGCACGCA CCGGGATCGA CTTCGGGCTG CCGATCGGCC GGCTCGGCGA CCTCCGGATG GGCATCGGCT ACGCGACCGG GCACGGCTCA CCGAACTACA ACCTGCCGTT GTCGTTCGCT GACGGCAGCT CGACCTGGCC GAGCTTCACG TCGCAGGCGC TGACCGCGCG CGCGCGGCTC GTCATCGATC AGCTCGACGA CCCGATGTTC CCGCGCCGGG GCTACTACGG CGAATTTCGC GTCGAACGCT CGCTGTGGTC GCACAACAGC CAGTCCGCGT CGGACCTCGC CGATACGTCG AACACGCCTT ACACCGAGAT CTACGGCAAG GCGATGATCG CGCAGCAGTT CGGCCGGCAC AGTGTCAGCG CGACGATCGA GGGCGGCAAG AGCATCGGCG GGACCAACCT GATCAACGCG TTCAACTTCA CGCTCGGCGG GTTCCAGCAT CTCGCCGCGT ATGCGGCCGA CCAGTTGACC GGCAACGAAC TCGCATACGG GAACGTGACT TACATGAACC AGCTCGCGAC GTTCAACGCG TCGCCGATCA AGGCGCTGTC GGTGGGCGCC AGCGCGGAAG TCGGCAACGT GTGGTCGAGC GGCGTGCAGG TGGGCGGCGG CACGCTCAAG CAGAGCTATA CGTTCTTCAC GAGCCTGTCG ACCGCGTTCG GTCCGCTGTA CATGGGCGTC GCGCTCGCGC CGGGCGGGCG GCGCAACATC TACCTGCAGC TCGGCCGCAC GTATTGA
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Protein sequence | MTATATLRWL GVRRIGATLV ALWCCTVAAQ PLPAADTATR TAPVAAAAAP NAAPNATPAP TCTADGGPAG RAPVGLVLSG GGARGYAHLG VLKVLEENRI PIDCIAGTSM GAVVGGLYAS GMAADEMQQR LSEVNLADIA FDVTDRADLP QTSREDERLY INSLTLGFGK KGVKAPVGLV QGNRLQALLA NWTAAVPTNQ PFDQLPIPYR AVATDLQTGQ MVVLDHGSLP LAIRASMAMP GLFAPAEING RALVDGGLVS NLPVDTARRM GAKVVIAVDI GSPLRPLDAL ASPADVMQQM VGILIRQNVT SQRQQLAAQD VLLTPDLGAL AFTDFQNAKQ AIAAGAAAAT AALPRLKRFA LTPEQYAAYR SAHAQPLPPP IRITRIEIKT SGGIPKRVVS DALHVKPGDT YDPATVSQDL LGLTTGGNFE SVTQQIVSHG DENVLVIDAR EKYWGPNFLL FGVGMSSSST DEGGFRLHVG YRRPWLTESG LEFRADTTIG SDLVSARVEL RQPLPAAYGF YISPYAEYQR RYVNLYDDSG EVKLNQYLMQ TARTGIDFGL PIGRLGDLRM GIGYATGHGS PNYNLPLSFA DGSSTWPSFT SQALTARARL VIDQLDDPMF PRRGYYGEFR VERSLWSHNS QSASDLADTS NTPYTEIYGK AMIAQQFGRH SVSATIEGGK SIGGTNLINA FNFTLGGFQH LAAYAADQLT GNELAYGNVT YMNQLATFNA SPIKALSVGA SAEVGNVWSS GVQVGGGTLK QSYTFFTSLS TAFGPLYMGV ALAPGGRRNI YLQLGRTY
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