| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4881 |
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| Symbol | |
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| ID | 6179735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 2019444 |
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| End bp | 2026544 |
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| Gene Length | 7101 bp |
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| Protein Length | 2366 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641684634 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001811545 |
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| Protein GI | 172063894 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.312195 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000166918 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAATATTG CGCATTCGAA AAAGAGCGGC GAGTCGTTTC CGAGATTCCT GTTGCCGACC
GGCGTTTTCC TCGCCTTGTC GGGTGCGGGC ATCGTTTCCG CCTATGCGAC CTGCTCGACG
GCAGGCACGA CGGTGACCTG TTCGGGTGTC GCGAATCCGC TGGCGCCGAG CTATTCGAAC
AGCGCGAACA ACCTGAACGT CACGGTGAAC CCCGGCGCGA GCGTCGGCGT GCTGCTGGGC
GTGGGTGGCA CCGCGATGTC GCTGACCGGC AGCAACAACA CGCTGACCAA CAACGGCACG
ATCGATCCGT CCCTGCTCGG CTCGGGCCTC GGCGTGCTGT CGAGCGGCGC GGTGGTCGGC
AATGCGGCGG CGAGCACCAC GACCGTGACC AACAACGGCA CGATGAACGG CTCGACCGGT
GTCGCGGTCA GCGGCGTGAC GGGCATGGCG CTGTCGGTGC AGAACGGCAC GGGCGGCACG
TCGACGATCA CCAACACCGG CACGATGGGC ACGACCGCGC TGGCCGGCGC GACGCTCATC
GGCGCGGATG CGCCCGTAGT TGCCGCGTAC GGCGGCGGCA CGGTCAACAT GACGAACAGC
GGGACGATCA CCGGCCGCGT GTCGCTCGGA TCGAACGGCA CGCCCGGGCT GGGCAATACG
TTTACAAACT CGGGCACGAT CAACGGCAGC GTGTCGATGG GCGCGAACAG CACCAACACG
TTCAATGCCG TGACGGGCTC GTCGGTCAAC ACGGCAGGCG GCACGGGCGG CGCGTTCAAC
ATCACGGTCG GGCCGGTCAC GCTCGGCGTC GCGGCGACCG GCACCGTCGA CGGCGGCGCC
GGCGGCAACA ACACGCTGGT GCTGCAGCAA GGCGTGTCGG CCAACGGCAC CATCGCGGTC
AACAACTACA TCAACTTCAA TCATCTCGAC GTCACGAGCG GCAACTGGAC GATCAACGGG
GCGTCGACCG CGCAGGACGC GACGCTCGCG GGCGGCGTCG CGATCATCGG CGACAACGCG
TCGCTCGGCA CGGGCACGAT CACGGCCACC GGCGGCGCGC TGCAGGCCGG CACCGCCGGG
CTCGACGTCA GCAACAACGT GAATCTCGGG GCGGGCGGGC TGACGGTGCA GGGCGCGACG
GGGCTTTCGC TGTCGGGCAC GGTGTCGGGC GCGGGCGCGC TGACGAAGAA CGACGGCGGC
ATCCTGACGC TGTCGGGCGC GAACAGCTAC ACGGGCGGCA CGAACCTGAA CGCCGGCGGC
CTCGTGGTCG GCAACAACGA CGCGCTCGGC AGCGGTGCGC TGAACGTCAA CGCGTCGGCG
TCGCTCGACA CGAGCACGAA CGTGACGCTC GGCAACGCGG TCAATCTCGC GACGGGCGCG
ACGCTGACGC TCGGCGGCAG CAACGATCTC GGCCTGGCCG GCACGATCGG CGGCGCGGGC
GGCCTCGTGA AGAACGGCAC GGCGACGACG ACGCTGACCG GTGCGAACAC GTACGCCGGC
GACACGACGA TCAACAGCGG CACGCTGGCG CTCGGCGCGG GCGGCAGCCT CGCGTCCACG
GGCACGGTCA ATCTCACCGG CGCGGGTGCG ACGTTCGACC TGGCCGGCGC GACGGGCGCG
CAGACGATCG GTTCGCTCGC CGGGGCGGCC GGCACGAACG TGAACCTCGG CGGCAATTCG
CTGACGCTCG ACGGCAGCGC GAATACGACC TACGCCGGCA CGATCGCAGG CACGGGCGGC
TTGACGCTGT CGGGCACCGG CACGCAGGCG CTGACCGGCG CGAACGTCTA TACGGGCGAC
ACGAACCTGA ACGGCGGCAA CGTCGTCGTC GGCAGCAACA CGGCGCTGGG CTTCGGCGCG
GTCAACGTCA ACGGCTCGTC GACGCTCGAT GCGACCACCA ACGTGTCGCT GGCGAACGGC
GTCAACCTCG CCACCGGCAC GACGCTCACG GTCGGCGGCA GCACCGATCT CGGGCTGAGC
GGCACGATCG CCGGCGCGGG CGGGCTCGTG AAGAACGGTG CGGCGGCGCT GACGCTGACG
GGCGCGAACA GTTACACGGG CGGCACGACG CTGAACGCCG GCGGCCTCGT GCTCGGCAAC
GACGCGGCGC TGGGCAGCGG CGCGCTGAGC GTCGGTGGCG CGGCGACGCT CGATACGACC
ACGAGCCTGT CGGTCGCCAA CGCGATCGAC ATCGGCACCA GCGCGACACT GACGCTCGGC
GGCAGCAACG CACTCGGGCT GAGCGGCGCG ATCACAGGCG CGGGCGCGCT CGTGAAGGAC
GGCGCGGCGA CCACGACGCT GACGGGCACG AACACCTACA CGGGCGGCAC GACGATCAAC
GCCGGCACAC TGGCGATCGG CGCGGGCGGC AGCCTGTCGT CCACAGGTAC GGTGAACCTG
GCCAATGCGG GCGCCGCATT CGACATCGCC GCGGGCGGCG CACAGTCGAT CGGCGCGCTG
TCGGGCGCGG CCGGCACGAG CGTGAACCTG GGCGCAAACG CGCTGACGCT GGGCGGGACC
GCGAGCGGCA CGTTCGGCGG CACGATCGGC GGCACCGGCA GCCTGACGCT GGAGGGCACC
GGCACGCAGA CGCTGAACGG CGTGAATACC TATACAGGGG GCACGAACCT GAACAGCGGC
AGCCTCGTGC TCGGCAACAA CGCGGCGCTC GGCACTGGCG CGTTGAATGT CGGCGGCGCG
GCGACGCTCG ATACGAACGC GAGCCTGTCG GTCGCCAACG CGATCGATAT CGGCACGGGC
GCGACGCTGA CGCTTGGCGG CAGCAACGCG CTCGGGCTGG GCGGCGCGAT CTCCGGCGCA
GGCGCGCTCG TGAAGGACGG CGCGGCGACG ACCACGCTGA CGGGTACGAA TACCTACACG
GGCGGCACGA CGATCAACGC GGGCACGCTG GCGGTCGGCG CGGGCGGCAG CCTCGCTGCG
ACCGGGACGA TGAATCTCGC GAGCGCGGGC GCGACGCTCG ATTTGAGCGG TGCGTCCGGT
GGGCAGTCGC TCGGCGCGCT GTCCGGCGTC GCGGGGACGA ACATCGATCT GGGCGGCAAC
GCGCTGACGC TGGGCGGGAC CGCAAGCGGC ACCTTCGGCG GCGCGATCGG CGGCACCGGC
AGCCTGACGC TGGCCGGCAC CGGCACGCAG ACGCTGAACG GCGCGAGCAC CTATTCGGGC
GGCACGAACC TGATCAGCGG CGGCCTCGTG CTCGGCAACA ACGCGGCGCT CGGCGTCGGC
GCATTGAATG TCGGCGGCGC GGCGACGCTC GATACGAACG CGAGCCTGTC GGTCGCCAAC
GCGATCGATA TCGGCACGGG CGCGACGCTC ACGCTCGGCG GCACCAACGC ACTCGGGCTG
AGCGGTGTGA TCTCCGGGTC CGGCGCGCTC GTGAAGGACG GCACGGCGAC GACCACGCTG
ACGGGGACGA ATACCTATAC CGGCGGCACC ACGATCAACG CGGGCACGCT CGCGGTCGGC
GCGGGCGGCA GCCTCGCTGC GACCGGCACG ATGAATCTCG CGGGTGCAGG CGCGACCCTC
GACCTGAGCG GCGCGTCGGG CGGGCAGACG TTCGGTGCAC TGTCGGGCGT GGCCGGCACC
AATGTGAGCC TGGGCGCGAA TGCGTTGACG CTGGGCGGCA CCGCGAGCGG CACGTTCGGC
GGCACGATCG GCGGCACCGG CAGCCTGACG CTCGCGGGCA CCGGTACGCA AACGCTGTCC
GGCGCGAACA CCTACACGGG CGGCACGACG ATCAACGGCG GCAGCACGCT CGCGCTCGGC
GCGGGCGGCA GTCTCGCGTC GACGGGCACG GTGAATCTGG CTGGCGCGGG CGCGACGTTC
GACCTGGGCG GTGCGTCGGG CGCGCAGACG ATCGGCGCGC TGACCGGCGC GACCGGCTCG
ACCGTGAACC TCGGCGCGAA TGCGCTGACG CTGAGCGGCA GCGGCAACAA CACGTTCGGC
GGCGCGATCG GCGGCACCGG CAGTCTGACG CTGGCCGGCG CCGGCACGCA GACGTTGACG
GGCGCGAACA CCTATACCGG CGGCACGACG ATCAACGGCG GCAGCACGCT TGCGCTCGTT
TCGGGCGGCA GCCTCGCATC GACCGGCACA GTGAACCTGG CCGGCACGGG CGCGACATTC
GACGTGAGCG GTGCGGCGGG CGCCGAGACC ATCGGCGCGC TGTCGGGCGC GGCCGGCACG
ACGGTGAATC TCGGCGCGAA TGCGCTGACG CTGAACGGCA GCGGCGCCAG TACGTTCGGC
GGGACGATCG GCGGCACCGG CGCCGTGACG GTCGCGGGCA CCGGCACACA GACGCTCACG
GGCGCGAACA CGTACACCGG CGGCACGACG ATCAACGGCG GCAGCACGCT TGCGCTCGGT
TCGGGCGGCA GCCTCGCATC GGGCAGCACG GTGAACCTCG CCGGCACCGG CTCGACGTTC
GATCTGAGCG GCGCGTCGGG CACGCAGACG CTCGGCACGC TGACCGGCAC GGCCGGCACG
AACGTGAACC TCGGCGCGAA CGCGCTGACG CTGAACGGCA GCGGCAACGG CACGTTCGGC
GGCGCGATCG GCGGCACCGG CGGCCTGATG CTCGCGGGCA CCGGCACGCA GACGTTCACA
GGCGCGAACA CGTACACCGG CGGCACGACG ATCAACGGCG GCAGCACGCT TGCGCTCGGC
TCGGGCGGGA GCCTCGCGTC GACGGGCACG CTGAATCTCG CCGGGTCGGG CGCGACGTTC
GACGTGAGCG GCGCAGCGGG CGCCGAGACG ATCGGCGCGC TGTCGGGCGT GGCCGGCACG
AACGTGAACC TCGGCGCGAA CGCGCTGACG CTGAACGGCA GCGGCTCCAG CACGTTCGGC
GGGGTCATCG GCGGCACCGG CGCCGTGACG GTCGCGGGCA CCGGCACGCA GACGCTGACG
GGCGCGAACA CGTACACCGG CGGCACGACG ATCAACGGCA GCAGCACGCT CGCGCTCGGT
TCGGGCGGCA GCCTCGCGTC GACGGGCGCC GTGAACCTCG CCGGCACCGG CGCGACGTTC
GACGTGAGCG GCGCAGCGGG CACGCAGACG ATCGGCACGC TGTCCGGGGC GGCCGGCAGC
ACCGTGAACC TCGGCGCGAA CGCGCTGGCG CTGAACGGCA GCACCAACGG CACGTTCGAC
GGCGTCATCG GCGGCACGGG CGGCGTGACG GTCGCGGGCA CCGGCGTCCA GACGCTGACC
GGCAGCAACA CGTACACGGG CGGCACGACG ATCGCGTCGG GCGGCACGCT GCAGCTCGGC
AACGGCGGCA CGTCGGGCAG CGTGGTCGGC AATGTCGTCG ACAACGGCGC GCTGATCGTC
AACCAGTCCG GCAGCGTGAT GCTCGCGAAC GTGCTGTCCG GCACCGGTTC GCTGACCCAG
GCCGGCAGCG GAGCCCTGAC GCTGACGGGC ACCAACACGC TGAGCGGCCC GACGACCGTC
GCTGCGGGCA CGCTCGACGT CGCCGGTTCG CTCGCCCAGT CGGCCGTGAC CGTGCAGAAC
GGCGCGACGC TGACGGGCAC CGGCACGGTT GGCGGCGTCG TGGTCCAGAG CGGCGGGATC
GCGGCCGCGT CGCAACCGGG CGCCGCGCTG AACGTCGCCG GCAACGTCAC GTTCCAGCCG
GGCTCGACGC TGCAGGTCGC GGTCACGCCG CAGCAAAGCG GCAGCATTGC CGCGGGCGGC
ACGGCGACGC TGAACGGCGG CACCGTGCAG GTGCTCGCGA ACCAGGCCAG CTTCCAGCCG
AGCACGACGT ACACGATCCT CAGCGCATCG TCGGGCGTGC AGGGCGCGTT CAGCCAGGTG
AATTCGAACT ACGCGTTCCT GATGCCGACG CTCAGCTACG ATCCGAACCA CGTGTACCTG
CGGCTCGTGA CGAACGGCAC GGCGCTGCCC GATGTCGCGA CGACGCCGAA CCAGCGCTCG
GTCGCGACCG CGATCGGTGC GCTCGGCGCG GGCAATACGC TGTACGACAA GGTGCTGACG
ACCGATGCGG CCACCGCGCG CCAGGCCTAC TCGGTGCTGG ACGGCGAACT GCAGGCGAGC
CTGAAGAGCA TGCTGCTGCT CGACAGTCGT TACGTGCGCG ATGCCGTGAC CGATCGCGTG
CGCCAGGGCC TCGCGCCCGG ATCGGGGCCG CTCGCGGCGC TGTCGTCCGG CGGGGCCGCG
CTGTGCGGCG ACAACACGGC CGGCGTGACC GATCCGACGC TGGCGCCGGA GCGCCGGATC
GGCTCGCGTG AGGGCTGCTA TGGCGGCACG CCTTACCAGC CGGTGGTCTG GGGGCAGGCG
TTCGGCGGCC GCAGCCGGCT CGCGGGCGAC GGCAACGCGT CGACGATCAA CCGCAGCATG
ACCGGCTTCA TCGCCGGTGC CGACATGGCA CTCAACGACA AGTGGCGTGC CGGTCTGGCC
GCGGGCGTCA CGCACAGCTC GCTCGACAAC GACCAGAGTT CGTCGGCGGC GGTCAACAGC
TACTACCTGT CGCTGTACGG CGGTGCGCAG TACGGCGCGC TCGGCGTGCG CGGCGGCGCG
TCGTACACGT GGTACCGGAT CAACACCGAC CGCTATCCGG GCTTCGCGGG CTTCTCGGAT
CACGATTCGG CCGGCTACAA CGCGCATTCG GCGCAGGTGT TCGGCGAAGT CGGCTACGCG
CTGCCGCTCG GGCCGGTCGC GCTCGAACCG TTCGCGGGTC TGGCCTACGT GAACCTGCAT
ACCGACGGCT ATACCGAAAG CGGCGGTGCA GCGGCGCTGC AGGCCGGCGG CCAGACGACC
CACATCGGGT TCTCGACGCT CGGCCTGCGC GCCGCGTCGC AGCTCGGCTC GATCGCGAGC
GGCACGTTCA CCGCACGCGG CACGGTCGGC TGGCGGCATG CGTTCGGCAA CGTGCGGCCG
TCGTCGGCGT TCACGTTCGC GAACGGCGGC ACGTCGTTCC AGGTGTCGGG TGTGCCGATT
GCTCGCGACA GCGCGGTGCT CGAGGCCGGC ATCGACGCGA ACATCACGAA GCGCCTGACG
CTCGGCCTCA CGTTCAGCGG CCAGTACGGC AGCGGCGTGC GCGACAACGC GGTGCTCGGC
AACATTCTGT GGAAGTTCTG A
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| Protein sequence | MNIAHSKKSG ESFPRFLLPT GVFLALSGAG IVSAYATCST AGTTVTCSGV ANPLAPSYSN
SANNLNVTVN PGASVGVLLG VGGTAMSLTG SNNTLTNNGT IDPSLLGSGL GVLSSGAVVG
NAAASTTTVT NNGTMNGSTG VAVSGVTGMA LSVQNGTGGT STITNTGTMG TTALAGATLI
GADAPVVAAY GGGTVNMTNS GTITGRVSLG SNGTPGLGNT FTNSGTINGS VSMGANSTNT
FNAVTGSSVN TAGGTGGAFN ITVGPVTLGV AATGTVDGGA GGNNTLVLQQ GVSANGTIAV
NNYINFNHLD VTSGNWTING ASTAQDATLA GGVAIIGDNA SLGTGTITAT GGALQAGTAG
LDVSNNVNLG AGGLTVQGAT GLSLSGTVSG AGALTKNDGG ILTLSGANSY TGGTNLNAGG
LVVGNNDALG SGALNVNASA SLDTSTNVTL GNAVNLATGA TLTLGGSNDL GLAGTIGGAG
GLVKNGTATT TLTGANTYAG DTTINSGTLA LGAGGSLAST GTVNLTGAGA TFDLAGATGA
QTIGSLAGAA GTNVNLGGNS LTLDGSANTT YAGTIAGTGG LTLSGTGTQA LTGANVYTGD
TNLNGGNVVV GSNTALGFGA VNVNGSSTLD ATTNVSLANG VNLATGTTLT VGGSTDLGLS
GTIAGAGGLV KNGAAALTLT GANSYTGGTT LNAGGLVLGN DAALGSGALS VGGAATLDTT
TSLSVANAID IGTSATLTLG GSNALGLSGA ITGAGALVKD GAATTTLTGT NTYTGGTTIN
AGTLAIGAGG SLSSTGTVNL ANAGAAFDIA AGGAQSIGAL SGAAGTSVNL GANALTLGGT
ASGTFGGTIG GTGSLTLEGT GTQTLNGVNT YTGGTNLNSG SLVLGNNAAL GTGALNVGGA
ATLDTNASLS VANAIDIGTG ATLTLGGSNA LGLGGAISGA GALVKDGAAT TTLTGTNTYT
GGTTINAGTL AVGAGGSLAA TGTMNLASAG ATLDLSGASG GQSLGALSGV AGTNIDLGGN
ALTLGGTASG TFGGAIGGTG SLTLAGTGTQ TLNGASTYSG GTNLISGGLV LGNNAALGVG
ALNVGGAATL DTNASLSVAN AIDIGTGATL TLGGTNALGL SGVISGSGAL VKDGTATTTL
TGTNTYTGGT TINAGTLAVG AGGSLAATGT MNLAGAGATL DLSGASGGQT FGALSGVAGT
NVSLGANALT LGGTASGTFG GTIGGTGSLT LAGTGTQTLS GANTYTGGTT INGGSTLALG
AGGSLASTGT VNLAGAGATF DLGGASGAQT IGALTGATGS TVNLGANALT LSGSGNNTFG
GAIGGTGSLT LAGAGTQTLT GANTYTGGTT INGGSTLALV SGGSLASTGT VNLAGTGATF
DVSGAAGAET IGALSGAAGT TVNLGANALT LNGSGASTFG GTIGGTGAVT VAGTGTQTLT
GANTYTGGTT INGGSTLALG SGGSLASGST VNLAGTGSTF DLSGASGTQT LGTLTGTAGT
NVNLGANALT LNGSGNGTFG GAIGGTGGLM LAGTGTQTFT GANTYTGGTT INGGSTLALG
SGGSLASTGT LNLAGSGATF DVSGAAGAET IGALSGVAGT NVNLGANALT LNGSGSSTFG
GVIGGTGAVT VAGTGTQTLT GANTYTGGTT INGSSTLALG SGGSLASTGA VNLAGTGATF
DVSGAAGTQT IGTLSGAAGS TVNLGANALA LNGSTNGTFD GVIGGTGGVT VAGTGVQTLT
GSNTYTGGTT IASGGTLQLG NGGTSGSVVG NVVDNGALIV NQSGSVMLAN VLSGTGSLTQ
AGSGALTLTG TNTLSGPTTV AAGTLDVAGS LAQSAVTVQN GATLTGTGTV GGVVVQSGGI
AAASQPGAAL NVAGNVTFQP GSTLQVAVTP QQSGSIAAGG TATLNGGTVQ VLANQASFQP
STTYTILSAS SGVQGAFSQV NSNYAFLMPT LSYDPNHVYL RLVTNGTALP DVATTPNQRS
VATAIGALGA GNTLYDKVLT TDAATARQAY SVLDGELQAS LKSMLLLDSR YVRDAVTDRV
RQGLAPGSGP LAALSSGGAA LCGDNTAGVT DPTLAPERRI GSREGCYGGT PYQPVVWGQA
FGGRSRLAGD GNASTINRSM TGFIAGADMA LNDKWRAGLA AGVTHSSLDN DQSSSAAVNS
YYLSLYGGAQ YGALGVRGGA SYTWYRINTD RYPGFAGFSD HDSAGYNAHS AQVFGEVGYA
LPLGPVALEP FAGLAYVNLH TDGYTESGGA AALQAGGQTT HIGFSTLGLR AASQLGSIAS
GTFTARGTVG WRHAFGNVRP SSAFTFANGG TSFQVSGVPI ARDSAVLEAG IDANITKRLT
LGLTFSGQYG SGVRDNAVLG NILWKF
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