| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4873 |
|---|
| Symbol | |
|---|
| ID | 6180481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 2010437 |
|---|
| End bp | 2011099 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641684626 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001811537 |
|---|
| Protein GI | 172063886 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00274413 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0000000776703 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTAC TGCTCGTCGA GGACGATCCG CTGATCGGCA GCGGTCTCGA ACAGGGTCTC
AAACAGGAAG GCTTCGCGGT CGACTGGGTC AAGGACGGCG ACGCCGCGTC GCTCGCGCTG
CGCTCGACCG CGTATGGCCT CCTGCTGCTC GACCTCGGGC TGCCGAACCG TGACGGCCTG
TCGGTGCTCG CGTCGCTGCG CCGCCGCGAC GAAACCCTGC CCGCAATCAT CATCACCGCG
CGCGATGGCG TGCCGGACCG CATCGCCGGC CTCGACAGCG GCGCCGACGA CTACCTCGTC
AAGCCGTTCG TGCTCGAGGA GCTGCTCGCC CGCATCCGCG CAGTCAACCG CCGCCATGCG
GGGCGCGCGC AAACGACCCT CGCGATCGGT CCGCTGCGGC TCGATCCGGT CAAGCATCTG
GTCTGGCTCA ACGACGACGA AGTCACGCTG TCGCCGAAGG AATTCGTGCT GCTGCACGAG
CTGATGCGCG ACCCCGGCGC GGTGATCTCG CGCGAACAGT TCGAGGAACG GCTGTACAGC
TGGGGCGAGG AAATCGAGAG CAACGCGGTG CAGGTGCACA TCCACAACCT GCGCAAGAAA
CTCGGCCACG ACATGATCCG CACGGTGCGC GGCGTCGGCT ACCGGATCGG TGACGGCGCA
TGA
|
|---|
| Protein sequence | MRVLLVEDDP LIGSGLEQGL KQEGFAVDWV KDGDAASLAL RSTAYGLLLL DLGLPNRDGL
SVLASLRRRD ETLPAIIITA RDGVPDRIAG LDSGADDYLV KPFVLEELLA RIRAVNRRHA
GRAQTTLAIG PLRLDPVKHL VWLNDDEVTL SPKEFVLLHE LMRDPGAVIS REQFEERLYS
WGEEIESNAV QVHIHNLRKK LGHDMIRTVR GVGYRIGDGA
|
|---|
| |