| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4859 |
|---|
| Symbol | |
|---|
| ID | 6180616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1995928 |
|---|
| End bp | 1997382 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641684613 |
|---|
| Product | peptidase M20 |
|---|
| Protein accession | YP_001811524 |
|---|
| Protein GI | 172063873 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.928163 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0105361 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCCG TCGACACTAC CCCCGTCCTC GACCATGACA AGCTCGTTAC CTTCGTCGAG
CGCAAGTGGA ACGATGAAAT CCTCCACGCA CTGACCGACT ACATCGCGAT CCCCGCGAAG
AGCCCCGCAT TCGACCCCGA CTGGGCGCAG CGCGGGTATC TCGAACGCGT CGTCACCGAT
GCCGCGCAGT GGGCCGAACG CCAGCCGGTG AAGGGCCTCA AGCTCGAGAT CGTGCGTCTG
CCCGGCCGCA CGCCGGTGAT CTTCTTCGAA ACCCCCGCGA CGCGCGCGGG CAGCACCGAC
ACGATCCTGC TGTACGGCCA CCTCGACAAG CAGCCCGAAT TCGACGGCTG GCGCGCGGAC
CTCGGCCCGT GGACGCCGAA GTTCGAGAAC GGCAAGCTGT ACGGCCGCGG CGGTGCGGAC
GACGGCTACG CGATCTATGC GAGCCTCGCG GCGCTCGGCG CGCTCGACGA GCAGGGCGTC
GAACGGCCGC GCTGCGTCGG CCTGATCGAA ACCTGCGAGG AGTCGGGCAG CTACGACCTG
CTGCCGTACG TCGACGCGCT GCGCGACCGG CTCGGCCAGG TGTCGCTCGT CGTGTGCCTC
GATTCGGGCG CCGGCAACTA CGACCAGATG TGGCTCACGA CGTCGCTGCG CGGGCTGGTG
TCCGGCGACC TGCAGGTCGA GGTGCTGGAG GAAGGCGTTC ACTCGGGCGT CTTCGGCGGC
ATCGCGCCGT CGAGCTTCCG CGTGATGCGT CAGCTGTTCG AACGCCTCGA AGATGCGAAG
AACGGCAACC TGCTGCCGGG CGTGTTCCAT TGCGAGATTC CCGACAGCCG CGTGCGCGAA
GCCGACGCGG CCGCCGCGAT TCTCGGCGAC ACCGTGTGGA AGGGGCTGCC GTGGGCGTGC
GGGATGGACG GCAAGCCGGT GCTGCCGACC ACGACCGATC CGCGCGAGGC GCTGCTGAAT
TCGACGTGGC GTCCGTCGCT GTCGGTGACG GGCGCGGCCG GCCTGCCGGC GCTTTCCGAC
GCGGGCAACG TGCTGCGTCC GCGCACCGCG TTCAAGCTGT CGCTGCGCCT GCCGCCGCTC
GTCGACGCCG CGCAGGCCGT GCAGCAGCTG AAGGAACTGC TCGAACTCGA TCCGCCGTAC
AACGCGAAGG TCACGTTCAA GCCCGACGCG GGCGCCGCGA CCGGCTGGAG CGCGCCGGAT
CTCGCGCCTT GGCTCGCGTC GTCGCTCGAC GCCGCGTCGC GCCGCCACTT CGGCGCGGAC
TGCGCGTACA TGGGCCTCGG CGGCACGATC CCGCTGATGA ACGTGCTGCA GGAAGGCTTC
CCGTCCGCGC AGTTCATGGT GTGCGGCGTG CTCGGGCCGA AGTCGAACGC GCACGGGCCG
AACGAGTTCC TGCACGTGCC GTACGCGAAG AAGCTGACCG CGGCGGTCGC CGACGTGATC
GCGACCGCGC GTTGA
|
|---|
| Protein sequence | MTSVDTTPVL DHDKLVTFVE RKWNDEILHA LTDYIAIPAK SPAFDPDWAQ RGYLERVVTD
AAQWAERQPV KGLKLEIVRL PGRTPVIFFE TPATRAGSTD TILLYGHLDK QPEFDGWRAD
LGPWTPKFEN GKLYGRGGAD DGYAIYASLA ALGALDEQGV ERPRCVGLIE TCEESGSYDL
LPYVDALRDR LGQVSLVVCL DSGAGNYDQM WLTTSLRGLV SGDLQVEVLE EGVHSGVFGG
IAPSSFRVMR QLFERLEDAK NGNLLPGVFH CEIPDSRVRE ADAAAAILGD TVWKGLPWAC
GMDGKPVLPT TTDPREALLN STWRPSLSVT GAAGLPALSD AGNVLRPRTA FKLSLRLPPL
VDAAQAVQQL KELLELDPPY NAKVTFKPDA GAATGWSAPD LAPWLASSLD AASRRHFGAD
CAYMGLGGTI PLMNVLQEGF PSAQFMVCGV LGPKSNAHGP NEFLHVPYAK KLTAAVADVI
ATAR
|
|---|
| |