Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4800 |
Symbol | |
ID | 6180013 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 1933753 |
End bp | 1935267 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641684559 |
Product | spermidine synthase |
Protein accession | YP_001811470 |
Protein GI | 172063819 |
COG category | [R] General function prediction only |
COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.654715 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCATA AGCGCGCGCT CGTCCTGTCG ATCCTCGTGC TCGCGTCGTG CGGGCTCGGC TACGAACTGA TCAGCAGCGC GCTGGCGAGC TACCTGCTCG GCGATTCGAT CCTGCAGTTC TCATCGGTGA TCGGCTGCTA CCTGTTCGCG ATGGGGATCG GCTCGTGGCT CGCGAAGTTC GTCGAGGACG ACGACGTGCT CGACCGCTTC GTCGACATCG AGCTGCTCGT CGGCCTGCTC GGCGGCGTGT CGGCCGCCCT GCTGTTCGCG GTGTTCGGCT GGCTGGCCGC GCCGTTTCGC GCGGCGCTCT ACGCGCTCGT GCTCGCGCTC GGCCTGCTGA TCGGGATGGA GATCCCGCTC GTGATGCGTG CGTTCCAGCA GCGCCGCCAG GCGTTCCGCC ATACCGTCAG CGAGGTGCTG ACCTTCGACT ATCTCGGCTC GCTCGCCGTG TCGCTGATCT TCCCGCTCGT GCTCGCGCCG CGTCTCGGCC TGTTGCGCAC GAGCTTCCTG TTCGGGCTGC TCAACGCGTT CGTCGCGCTG TGGACCACGC ACCTGTTCCG CGACGAGATC CGCAACGTGC GCGGCAAGCT GATGCGCGCG TCGCTCGTGA TCGGGCTGCT CGTCGCCGGC TTCGCGCTGT CGGAGCGCAT CACGCACTGG GCCGAACACG GCGTGTACGG CGACGAGACG GTCTATTCGG AAACCACACC CTATCAGCGC ATCGTGCTCA CGCAATGGCA CGACGACATG CGGCTGTACC TGAACGGCAA CCTGCAGTTC TCGTCGCGCG ACGAGCATCG CTATCACGAG GCGCTGATCC ATCCGACGAT CGAAGCGCTG CCGTGGGCGA AGCGCGTGCT CGTGCTCGGC GGCGGCGACG GCCTCGCGGT GCGCGAGCTG CTCAAGCACC GCAACCTCGA ACAGATCACG CTCGTCGATC TCGATCCGGC GATGACGAAG CTGTTCTCCA CCTCCGTGCC GCTCGTGAAG CTGAACCAGG GTTCGCTGAA GGACCCGCGC GTGCAGGTGA TCAACGCCGA CGCGGTGCGC TGGCTCGAAG CGAGCACCGA CGTGTACGAC GCGATCGTCG TCGACTTCCC CGACCCGACC AACTTCGGGC TCGGCCGGCT GTATTCGGTG CCGGTGTTCC GGCTGCTCGC GCGCCACCTG TCGGAAAACG GCTATGCGGT GATCCAGTCG ACGTCGCCGT ATTTCGCGCC GCACGCGTAC TGGACGATCG TCGCGACGCT GCACGAAGCG GGGCTCAACA CGTGGCCGTA CCACTGCTAC GTGCCGTCGT TCGGCGACTG GGGTTTCGTG ATCGCCGGCA AGCGCCGCGA CTTCACCGTG CCGACGCACT ATTCGGTGCC GACGCGCTGG CTCGACGCGC AGACGGCCGT CGAGATGTTC CACTTCCCGG CCGACATGCC GGCGCGGCCG ATGTCGCCGA ACGAACTCAA CGACCAGCCG CTCGTGCGCC GCTTCGACGA CGACTGGAAG CACGTGCTGC GCTGA
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Protein sequence | MLHKRALVLS ILVLASCGLG YELISSALAS YLLGDSILQF SSVIGCYLFA MGIGSWLAKF VEDDDVLDRF VDIELLVGLL GGVSAALLFA VFGWLAAPFR AALYALVLAL GLLIGMEIPL VMRAFQQRRQ AFRHTVSEVL TFDYLGSLAV SLIFPLVLAP RLGLLRTSFL FGLLNAFVAL WTTHLFRDEI RNVRGKLMRA SLVIGLLVAG FALSERITHW AEHGVYGDET VYSETTPYQR IVLTQWHDDM RLYLNGNLQF SSRDEHRYHE ALIHPTIEAL PWAKRVLVLG GGDGLAVREL LKHRNLEQIT LVDLDPAMTK LFSTSVPLVK LNQGSLKDPR VQVINADAVR WLEASTDVYD AIVVDFPDPT NFGLGRLYSV PVFRLLARHL SENGYAVIQS TSPYFAPHAY WTIVATLHEA GLNTWPYHCY VPSFGDWGFV IAGKRRDFTV PTHYSVPTRW LDAQTAVEMF HFPADMPARP MSPNELNDQP LVRRFDDDWK HVLR
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