| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4798 |
|---|
| Symbol | |
|---|
| ID | 6180238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1932142 |
|---|
| End bp | 1933203 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641684557 |
|---|
| Product | band 7 protein |
|---|
| Protein accession | YP_001811468 |
|---|
| Protein GI | 172063817 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4260] Putative virion core protein (lumpy skin disease virus) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.309981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGG GTTCGTTTAT CCGCAAGCAG TTCATCGACG TCCTGCAATG GACGGAAGAC
ACCGACGGCG TGCTGGCCTG GCGCTATCCG ATGGAAGACC AGGAGATCCA GTACGGCGGC
CAGCTGACCG TGCGCGAAAC GCAGGTCGCG ATCTTCGTCA ACGAAGGCAA GGTCGCCGAC
GTGTTCCAGC CCGGGCTGTA CAAGCTGGAA ACGCGCACGC TGCCGGTGCT CACGTACCTG
AAGAACTGGG ACAAGTTCTT TCAGTCGCCT TTCAAGTCGG ACGTCTACTT CTTCAGCACC
CGGCTGCAGC TCGGCCGGCG CTGGGGCACC GCGCAGCCGG TGACGATCCG CGATCGCGAA
TTCGGCTTCG TGCAGCTGCG TGCGTTCGGC ATCTACTCGT ACCGGATCGT CGATGCGGCC
GCGTTCCACC GCGAGGTGAG CGGCACGCGC GCGCAGTACA CGGTCGACGA TCTCGAACAG
CAGCTGCGCA ACCTGGTCGT CACCGCGATG AGCACGACGT TCGGCTCGGC CGACGTGCCG
TTCGTCGACA TGGCCGCGAA CCAGACGCTG CTGTCGCAAC GCGTCGCCGA GGCGCTGGTG
CCGGTGTTCA CGCGCTACGG CCTCGCGCTC GATGCGTTCG CGGTCGAAAG CGTGTCGCTG
CCGGCCGAGC TGCAGAAGGC GCTCGACCTG CGGATCGGCG CGGGGATGGC CGGCGATCTC
GGCCGCGCGA CGCAATACCA GACCGCGCAG GCGATCCCGC TGGCCGCGCA GAACCCGGGC
GGCATCGCGG GAGTCGGCGC GGGGCTCGCG GCCGGCGCGG TGATCGGCCA GGCGATGGCC
GGCCAGATCG CGGGCGCCGC GCACGCGGCG CCGCCCACGC CCGCCGCGGC ACCGGTTGCG
GCTGCGCAGC CGGCCGCACC GGCCGCCCCG ACAGCATCGA CCGAAGGGAC CGACTACGTG
CAGCGCCTCG AGCAGTTGAA GGCCCTGCTC GACAAGGGTC TCGTGACCGA AGAAGACTAT
TCGCGCGCGA AGGCGGAAAT CCTCGCGAAG CTCACCCGGT AA
|
|---|
| Protein sequence | MSLGSFIRKQ FIDVLQWTED TDGVLAWRYP MEDQEIQYGG QLTVRETQVA IFVNEGKVAD
VFQPGLYKLE TRTLPVLTYL KNWDKFFQSP FKSDVYFFST RLQLGRRWGT AQPVTIRDRE
FGFVQLRAFG IYSYRIVDAA AFHREVSGTR AQYTVDDLEQ QLRNLVVTAM STTFGSADVP
FVDMAANQTL LSQRVAEALV PVFTRYGLAL DAFAVESVSL PAELQKALDL RIGAGMAGDL
GRATQYQTAQ AIPLAAQNPG GIAGVGAGLA AGAVIGQAMA GQIAGAAHAA PPTPAAAPVA
AAQPAAPAAP TASTEGTDYV QRLEQLKALL DKGLVTEEDY SRAKAEILAK LTR
|
|---|
| |