Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4771 |
Symbol | |
ID | 6181238 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | + |
Start bp | 1907577 |
End bp | 1908830 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641684530 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_001811441 |
Protein GI | 172063790 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCTCG ATTCCCGCCA GCTCGCGACG CTCGCCCAGC AATACGGCAC CCCGCTGTGG GTGTACGATG CCGACGTCAT ACGCGACCGC ATCGCCCAAC TGCGTCAGTT CGACGTGATC CGCTACGCGC AGAAAGCGAA CTCGAACCTG CATATCCTGA AGCTGATGCG CGATGAACGC GTGTGCGTCG ACGCCGTGTC GCTCGGCGAG ATCGAGCGCA GCCTCGCGGC GGGGTTCAGT CCGGCAGGCG GTCCTGCTTC CGGCGATCCG GAAGGCGTCG TGTTCACGGC CGACCTGATC GACCGCCCGA CGCTCGCCGC CGTGCTGAAG CACGGCGTGA CCGTGAACGC CGGCTCGCTC GACATGCTGG CACGTGTCGG CGAGCATGCG CCCGGCCATC GCGTGTGGCT GCGCGTGAAT CCCGGCTTCG GCCACGGCCA CAGCAACAAG ACCAATACCG GCGGCCCCCA AAGCAAGCAC GGGATCTGGA TCGACGACGT GCCGCGCGCG ATCGAGATCG TGCGCCAGTA CGGGCTGAAG CTGGTCGGCA TCCACATGCA TATCGGCTCG GGCGTCGACT ATGGCCACCT GTCGCAGGTG TGCGACGCGA TGGTCGACCT CGTCACGTCG CTCGGCCATG ACATCGAAGC GATTTCCGCT GGCGGCGGCC TGTCGATTCC GTATCGCGAC GGCGAGCCGC GCGTGGACGT CGGCCACTAC TTCAGCCAGT GGGATGCGGC GCGCAAGCGG ATCGAACGGC ATCTCGGCCA TGCGGTGCGC ATCGAGATCG AGCCGGGCCG CTTCCTCGTC GCCGAGGCCG GTACGCTCGT CACCGAAGTG CAGGCCGTGA ACCATCGGCC GAAGCACGAC TTCGTGCTGA TCGATGCGGG CTTCAACGAC CTGATGCGTC CGTCGATGTA CGGCAGCTAC CACGCGGTGT CCGTGCATGC GCCGGACGGC GCGCTGCCGG CCGGCCGGCC GCTCGTCGAC ATCGCGATCG CGGGGCCCCT GTGCGAGTCC GGCGACGTGT TCACGCAGGA CGCGGGCGGA GTAGTCACGC ACCGCAAGCT CGCGCAACCG CAGATCGGCG ACCTGCTGTT CCTGCACGAT GCGGGCGCAT ACGGCGCATC GATGTCCTCG AACTACAACA GCCGGCCGCT CGCGCCTGAA GTGCTGGTCG ATCGCGGCAC GCCGCGGCTG ATCCGCCGCC GGCAGACGAT CGGCGAACTG CTCGCGCTCG AAACGTTCGA GTAA
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Protein sequence | MPLDSRQLAT LAQQYGTPLW VYDADVIRDR IAQLRQFDVI RYAQKANSNL HILKLMRDER VCVDAVSLGE IERSLAAGFS PAGGPASGDP EGVVFTADLI DRPTLAAVLK HGVTVNAGSL DMLARVGEHA PGHRVWLRVN PGFGHGHSNK TNTGGPQSKH GIWIDDVPRA IEIVRQYGLK LVGIHMHIGS GVDYGHLSQV CDAMVDLVTS LGHDIEAISA GGGLSIPYRD GEPRVDVGHY FSQWDAARKR IERHLGHAVR IEIEPGRFLV AEAGTLVTEV QAVNHRPKHD FVLIDAGFND LMRPSMYGSY HAVSVHAPDG ALPAGRPLVD IAIAGPLCES GDVFTQDAGG VVTHRKLAQP QIGDLLFLHD AGAYGASMSS NYNSRPLAPE VLVDRGTPRL IRRRQTIGEL LALETFE
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