| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4751 |
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| Symbol | |
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| ID | 6181178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1885739 |
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| End bp | 1887781 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641684510 |
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| Product | YscC/HrcC family type III secretion outer membrane protein |
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| Protein accession | YP_001811421 |
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| Protein GI | 172063770 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.552593 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCAAT GCGTCGCCCC GATCCGGTTT CAACCGCGCC GCCTGCAACG GGTTGCGCTC
GCCATGTGCG CGACCGCGCT GCTCACGGCG TCGCTGTGCA TGACGATCGC GCAGCCGGCG
CGCGCGGCCG ACCTGCGCTG GCGCAACAAG CCGTTCACGA TCGTCGCGAA CGGCAAGAAG
ATCGGCGACT TCATTCGCGA GCTCGCGTCG TCGCAGGGCG TGACGGCCGT GGTCGACCCG
AAGGTGGACG GTGTCATCAG CGGCCGCTTC TCGGGCACGC CGCAGCAGAC GCTCGATACG
ATCTGCTCGA CCTACGGGCT CACGTGGTAC TACGACGGCT CGTTCCTGTA CGTCGATCCG
GCCGACCAGT CGCAGACGCA GATGATTCCG ATCCCGCCGA ACGCGGCCGG CGAGATCGGC
CGCTCGCTGC AGGCGATGCA GATTCCCGAC AAGCGCTACA CGCTCGTGAT CAACGACCGC
GCGAACAGCG TGTACGTGGC CGGCCCGCGC CGCTATGTCG AACTCGTGCG CCAGGCGGTC
GGCTCGGTCG GCGATCCGTC GGCGAACGGC GCGCATGCGG ACATCCGCGC GTTCCGGCTC
AGGTACGGCT GGGCGTCCGA TTTCACGATC AACCGCTCGG GCAAGGAAGT GACGGTGCCG
GGCGTCGCGA CGATCCTGCG CCGGCTGTTC GGCAAGGGCG GCGGCACGAA CGAGCCGCCG
TCGAGCACGC CGCTCGGGCA GGCCGCGCGC CAGGTGAAGC TCGGCTCGGG GCTGACGATC
GCGGTGCCGC GGCTCGACTT TCCGGACATT TCCGGCGGCG CGCGCCAGGG CAGCTATGGC
GGCGCCGACA GCGCGGCCGG CGGCTTCTCG CCGTTCTCGA ACGCGGGCGG CGGCGACACG
CTGCCGCAGA TCGTCGCCGA TCCGGCGATC AACGCGGTGA TCGTGCGCGA CCTGCCGGAG
AACATGTACC GCTACCAGTC GCTGATCAAC CAGCTCGACG AGCGGCCGCG CATCGTCGAG
ATCAACGTGA CGATCATAGA CATCAACGAG GATTCGCTCG ACAGCCTCGG GATCGACTGG
CGCCTGCACA CGACGCACGG CGACGTGCAG ATCGGCAATG GCCAGAACCC GCTGAACGGC
AACACGCAGT ACAACGGCGC CGGCAACCCG CCGCTGACGT TCGGCATCGG CACCTCCGAA
ACCGGGCAGA CCGGCGCCTT CCTGCCGACC GGCATCGCGC TCACCGCATC GATCGGCGGC
TCGCTGCGCA ACTACCTGCT CACGCGCGTG AACGCGCTCG CCCAGAAAGG GCAGGCGCAG
CTGCGCTCGA AGCCGAAGGT GCTCGCCCTC GACAACACCG AGGCCATTCT CGAGAACCTC
ACGCAGTTCT ACGTGCAGGT GCAGGGCTAC CAGGATTCGT CGCTGTACAG CGTGACGACC
GGCACCAGCA TCAAGGTGAC GCCGATGATC GTCGACGAGG CGATCCGCAA TGCGGCGGCC
GTGTCGGGTA ATCCGCAGAG CGTGATGATG TCGATCGACA TCCAGGACGG CAACATCGTG
CCGGGGCAGG CGGTGTCGAA CGTGCCGGTG ATCCAGCAGC GCAACATCGT CACCAAGACG
ATGATCGACG AAGGCAAGAG CCTGCTGATC GCGGGCTTCA ACGACGACGA GGTGCGGCTG
AACAAGAGCG GCGTACCGTG GCTGTCGGAC ATTCCGCTGA TCGGCAACCT GTTCAAGTAC
ACCGACAAGT CGGGCAACCA CATGGAGCGG TTCTACCTGC TGACGCCGCG CGTGGTGACG
ACCGCGTCGA TGTACGCGCC GGACGGCTCG CCCGTGAACC CGGGCGCGGA CGGGCCGGCC
GATCCGAGCG GCGCGTCGAT GTATCGCCCG CCGGACAACG ACATAGCGGT GCCGCTGACG
CCCGCGCCGC TGCCCGGCAC GAAGTTCGGC CCGCCCGCGC TGCCGCCACC GCCGTCGGAT
GCGGCGTCGC GGCCCGTGGC GACGACCGCA GGAGCGCCCA CCCATGTCGA CGACCATCAT
TGA
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| Protein sequence | MRQCVAPIRF QPRRLQRVAL AMCATALLTA SLCMTIAQPA RAADLRWRNK PFTIVANGKK
IGDFIRELAS SQGVTAVVDP KVDGVISGRF SGTPQQTLDT ICSTYGLTWY YDGSFLYVDP
ADQSQTQMIP IPPNAAGEIG RSLQAMQIPD KRYTLVINDR ANSVYVAGPR RYVELVRQAV
GSVGDPSANG AHADIRAFRL RYGWASDFTI NRSGKEVTVP GVATILRRLF GKGGGTNEPP
SSTPLGQAAR QVKLGSGLTI AVPRLDFPDI SGGARQGSYG GADSAAGGFS PFSNAGGGDT
LPQIVADPAI NAVIVRDLPE NMYRYQSLIN QLDERPRIVE INVTIIDINE DSLDSLGIDW
RLHTTHGDVQ IGNGQNPLNG NTQYNGAGNP PLTFGIGTSE TGQTGAFLPT GIALTASIGG
SLRNYLLTRV NALAQKGQAQ LRSKPKVLAL DNTEAILENL TQFYVQVQGY QDSSLYSVTT
GTSIKVTPMI VDEAIRNAAA VSGNPQSVMM SIDIQDGNIV PGQAVSNVPV IQQRNIVTKT
MIDEGKSLLI AGFNDDEVRL NKSGVPWLSD IPLIGNLFKY TDKSGNHMER FYLLTPRVVT
TASMYAPDGS PVNPGADGPA DPSGASMYRP PDNDIAVPLT PAPLPGTKFG PPALPPPPSD
AASRPVATTA GAPTHVDDHH
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