| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4737 |
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| Symbol | |
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| ID | 6181015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | + |
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| Start bp | 1859717 |
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| End bp | 1860391 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641684496 |
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| Product | type III secretion system protein |
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| Protein accession | YP_001811407 |
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| Protein GI | 172063756 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.14844 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.748231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCAACC TGCCGAATCC GGTCGCGCTG ATCGCGGTGA TCGCCGCGCT GGGCATCGCG
CCGTTCGCGG CGCTGATGGT GACGAGCTAT ACGAAGCTCG TGGTCGTGCT CGGCCTGTTG
CGCTCCGCGC TCGGCATCCA GCAGGTGCCG CCGAACCTCG TGCTGAACGG CATCGCGCTG
ATCCTGTCGC TGTTCATCAT GGCGCCGGTC GGGATGTCGA TCCGCGATGC GCTGCAGTCG
CGCCACTTCG ATGCATCGGG GCAACTGTCG ACTTCCGATA TCGGCGTACT CGCCGATGCC
GCGCTGCCGC CGATCAAGGA TTTCCTGGTG TCGCATACGC GGCAGCGCGA CCGCGAATTC
TTCGTGCGCA CCGCGACGTC GGTCTGGCCG AAGAATCGCG CGGACGGCAT CAAGGACGAC
GACCTGCTCG TGCTGGTGCC GAGCTTCACG CTCGCCGAGT TGACCAAGGC GTTCCAGATC
GGCTTCGTGA TCTATATCGT GTTCATCGTC GTCGACCTGC TGGTCGCGAA CATCCTGCTC
GCGCTCGGGA TGCAGATGAT CTCGCCGACG ACGATCTCGG TGCCGTTCAA GCTGCTGCTG
TTCGTCGCGC TCGACGGCTG GTCGCTGCTG GTGCACGGGC TCGTGCTGTC GTACCGCGTG
GCGGGGGCGG GATGA
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| Protein sequence | MGNLPNPVAL IAVIAALGIA PFAALMVTSY TKLVVVLGLL RSALGIQQVP PNLVLNGIAL
ILSLFIMAPV GMSIRDALQS RHFDASGQLS TSDIGVLADA ALPPIKDFLV SHTRQRDREF
FVRTATSVWP KNRADGIKDD DLLVLVPSFT LAELTKAFQI GFVIYIVFIV VDLLVANILL
ALGMQMISPT TISVPFKLLL FVALDGWSLL VHGLVLSYRV AGAG
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