| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4686 |
|---|
| Symbol | |
|---|
| ID | 6179204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1804403 |
|---|
| End bp | 1805905 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641684445 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_001811356 |
|---|
| Protein GI | 172063705 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGGAT GGTCTGGAGT GACAGGCGCC GCGGGCGAAA CGCCCGCCGG TGCGCCGGCT
GAAGCGGGCG GCGGCACGGT GTTGACGGCG GGTGCGGTCG GTTTTCCGAC CGCGCTGGCG
AGCGCCGTCG GCCTCATCAT GGCGAGCCCG GTGATCCTCA CCGCGACCTC GGGCTTCGGG
ATGGGCGGCT GGGCGTTCGC GGTCGCGATG ATCATCGCAT TCGTGATGAT GCAGGCGCAG
GCGACGACGT TCTCCGAAGC CGCCGCGATG CTGCCGACGG CCGGCTCGGT TTACGATTAC
CTGTCGTGCG GGCTCGGCCG CTTCTGGGCG ATCACCGGCA CGATTTCCGC GTATTTCCTC
GTCCACGTGT TCGCCGGCAC GGCGGAGACG ATCCTGAGCG GCATCATGGC GCTCGTGAAC
TTCGAGTCGC TGAACGCCGC GCTCGAGAAG CACAACAGCT CGTGGCTCGT CGGCGTCGGC
CTGGTGGTCA CGTTCGCGAT CACCAACATC ATCGGCATCA AGGTGTTCAG CAAGCTCGAG
ATCGTGCTGA CGGCCGGCAT GTGGCTGTCG CTGATGATCT TCGGGATTCT CGGCCTCGCC
GCGGCGCCCG CCGTGCATCT CGACGGCTGG TTCGGCGGCT CGGCAGTCGG CACGTCGGTG
CCGGCCGTGC TGTCGCTGGT CGGGATGGCG ATGTTCATGT TCGTCGGCTG CGAGTTCGTC
ACGCCGCTCG CGCCGGAAAT GAAGGCGCCG GGCCGCACGA TTCCGCGTGC GATGGCGCTC
GGCCTCGTCG GCGTCGCGAT CTGCATGTTC CTGTATGGCG CGGCGATCCG CCGCCAGGTC
GCGAACGTGC CGGTCAGCCC CGACGGCCTG ACGCACCTGC TCGACACGCC GGGCGCGATT
CCCGCGTTCG CGCTGCAGGT GCTTGGGCCG TTCGGCCGCG TGTGGTTCGG CATCGCGTTC
CTGTGCGCGG GCGCCGCGAC GATCAACACG CTGATGGCCG GGCTGCCGCG CATCCTGTAC
GGGATGGCGA TCGACGGCGC GCTGCCGCGC TGCTTCGCGT ATCTGCATCC GCGCTTCAAG
ACGCCGGTGG TCGGCATCGT CGCGGCGGCG ATCGTGCCGA TCGCCCACGC GTGGCTGATC
CACGGCAACC TCGACAGCAT CCTGCACCTC GTGCTCGCCG CGACCTGCGC ATGGGGTACC
GCGTACCTGC TCGTCACCGC GTCGGTCGTG ATGCTGCGCA TTCGCCGTCC CGACCTGCCG
CGCCCGTACC GTTCGCCGCT GTTCCCGCTG CCGCAGATCG TGTCGAGCGT CGGCATCGTG
CTCGCGATCT GGTACATCAC GCCGCCCGGC ATGAACGCGC GCGACATCTA CGTGCCGTTC
GGCGCGATGC TCGGACTCAC CGCGCTGTAT GCGCTGTTCT GGACGGTCGT CGTGCAGCGC
CGGCATCCGT TCAAGCCGGT GCCGGTCGAG GAAGTGCTGC GCCGCGAGCA CGTCGCGTCG
TGA
|
|---|
| Protein sequence | MSGWSGVTGA AGETPAGAPA EAGGGTVLTA GAVGFPTALA SAVGLIMASP VILTATSGFG
MGGWAFAVAM IIAFVMMQAQ ATTFSEAAAM LPTAGSVYDY LSCGLGRFWA ITGTISAYFL
VHVFAGTAET ILSGIMALVN FESLNAALEK HNSSWLVGVG LVVTFAITNI IGIKVFSKLE
IVLTAGMWLS LMIFGILGLA AAPAVHLDGW FGGSAVGTSV PAVLSLVGMA MFMFVGCEFV
TPLAPEMKAP GRTIPRAMAL GLVGVAICMF LYGAAIRRQV ANVPVSPDGL THLLDTPGAI
PAFALQVLGP FGRVWFGIAF LCAGAATINT LMAGLPRILY GMAIDGALPR CFAYLHPRFK
TPVVGIVAAA IVPIAHAWLI HGNLDSILHL VLAATCAWGT AYLLVTASVV MLRIRRPDLP
RPYRSPLFPL PQIVSSVGIV LAIWYITPPG MNARDIYVPF GAMLGLTALY ALFWTVVVQR
RHPFKPVPVE EVLRREHVAS
|
|---|
| |