Gene BamMC406_4682 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4682 
Symbol 
ID6181058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp1800018 
End bp1801256 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content69% 
IMG OID641684441 
Productextracellular solute-binding protein 
Protein accessionYP_001811352 
Protein GI172063701 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0252692 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCTGT TGAGCCGCCT GCGCGCGCTG TCCGCCGTCG TTGCGCTGTC CTTTGCCGCC 
TCGCACTCCT TCGCGGCGGA TCTCGTCATC GCGGGCCGCG ACGACATCTA CGGCAAGGGG
CTGGCCGACG CCGTCGCCGG CTTCACCAAA CTGCATCCGG GTACCGACGT CGAACTGCTC
AAGCTGCCGA ACGCGAACCT GTACCAGAAG CTGAAGCTGT CGATGCGCGA AGGCACCGGC
ACGTACGACC TCGTGATGAT GGACGACACG TGGGCGCCCG AATTCATCGG CCACGGCTGG
CTGAAGCCGC TGCCGGCGTC GCTCGCCGAT GCCGATCTCG TGCCGTCCGC GGTCGCGCTC
GGCCGCAACG CGGCGGGCGC ACTGTACGCG CTGCCGATCG TCGGCAACGT CGAGATGTTC
GCTTACCGGA AGGATCTGCT CGCGAAGTAC AAGCTGCAGC CGCCGCGCAA CTGGGACGAC
GTGCTGAAGA TCGCGCAGAC CGTCGGCGGT GCGGACAAGA GCGTGTCGGG CGTCGTGTTT
CGCGGCACGA AGGGCAACCC GGTCGTGACG GGTTTCCTGC CGATCCTGTG GGCCTACGGC
GGCGACGTGT TCGACCGTGC CGGCAACGTG ACGATCGATT CGCGCGAGTC GCAGGCCGCG
CTGAAGACCT TCCTCGCGCT GAAGCCGTCC GCGCCGAAGG ACGTCGACGT GTACGGCGCC
GCCGAAGTGC GCGACGCGCT GCAGCGCGGC ACCGCCGCGC AGTCGATCGA AGTGTGGCCG
GCGTGGATTC CGGCGCTCGA CGATCCGAAG CAGTCGCGCG TGGTTGGGCA GATCGCGCTG
CAGCCGCCGC CCGGGCAGAC GGCAGGCCCC GCACCGATGC TCGGCATCTG GCAGATGGGC
ATTCCGAAGG ATGCGCCGCA CGCGAAGCTC GCGCAGGACT TCCTCGCTTA CCTGACCGCC
CGCGACACGC AGACGCGCCT CGCCGGAATC GGCATTCCGC CGACGCGCCG CAGCGTGTTC
GCCGATCCTG CGCTGGTGCG CCAGTACCGT TGGTATCCCG ATCAGCTGAA GGCGCTCGAA
GCTGGCCGTG CGCGGCCGCG CGTGAAGGAC TGGCAGCAGG TCGAGAGCAT TCTCGGCGAC
CAGCTGCAGC TCGCGCTGAC CGGCCAGGCT GCACCCGACG CCGCGCTGCG TCAGGCGCAG
CAGAAGATCG CTCAGGCGAT GGCCGCGGCC GGCAAGTGA
 
Protein sequence
MTLLSRLRAL SAVVALSFAA SHSFAADLVI AGRDDIYGKG LADAVAGFTK LHPGTDVELL 
KLPNANLYQK LKLSMREGTG TYDLVMMDDT WAPEFIGHGW LKPLPASLAD ADLVPSAVAL
GRNAAGALYA LPIVGNVEMF AYRKDLLAKY KLQPPRNWDD VLKIAQTVGG ADKSVSGVVF
RGTKGNPVVT GFLPILWAYG GDVFDRAGNV TIDSRESQAA LKTFLALKPS APKDVDVYGA
AEVRDALQRG TAAQSIEVWP AWIPALDDPK QSRVVGQIAL QPPPGQTAGP APMLGIWQMG
IPKDAPHAKL AQDFLAYLTA RDTQTRLAGI GIPPTRRSVF ADPALVRQYR WYPDQLKALE
AGRARPRVKD WQQVESILGD QLQLALTGQA APDAALRQAQ QKIAQAMAAA GK