Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_4682 |
Symbol | |
ID | 6181058 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010552 |
Strand | - |
Start bp | 1800018 |
End bp | 1801256 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641684441 |
Product | extracellular solute-binding protein |
Protein accession | YP_001811352 |
Protein GI | 172063701 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0252692 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTGT TGAGCCGCCT GCGCGCGCTG TCCGCCGTCG TTGCGCTGTC CTTTGCCGCC TCGCACTCCT TCGCGGCGGA TCTCGTCATC GCGGGCCGCG ACGACATCTA CGGCAAGGGG CTGGCCGACG CCGTCGCCGG CTTCACCAAA CTGCATCCGG GTACCGACGT CGAACTGCTC AAGCTGCCGA ACGCGAACCT GTACCAGAAG CTGAAGCTGT CGATGCGCGA AGGCACCGGC ACGTACGACC TCGTGATGAT GGACGACACG TGGGCGCCCG AATTCATCGG CCACGGCTGG CTGAAGCCGC TGCCGGCGTC GCTCGCCGAT GCCGATCTCG TGCCGTCCGC GGTCGCGCTC GGCCGCAACG CGGCGGGCGC ACTGTACGCG CTGCCGATCG TCGGCAACGT CGAGATGTTC GCTTACCGGA AGGATCTGCT CGCGAAGTAC AAGCTGCAGC CGCCGCGCAA CTGGGACGAC GTGCTGAAGA TCGCGCAGAC CGTCGGCGGT GCGGACAAGA GCGTGTCGGG CGTCGTGTTT CGCGGCACGA AGGGCAACCC GGTCGTGACG GGTTTCCTGC CGATCCTGTG GGCCTACGGC GGCGACGTGT TCGACCGTGC CGGCAACGTG ACGATCGATT CGCGCGAGTC GCAGGCCGCG CTGAAGACCT TCCTCGCGCT GAAGCCGTCC GCGCCGAAGG ACGTCGACGT GTACGGCGCC GCCGAAGTGC GCGACGCGCT GCAGCGCGGC ACCGCCGCGC AGTCGATCGA AGTGTGGCCG GCGTGGATTC CGGCGCTCGA CGATCCGAAG CAGTCGCGCG TGGTTGGGCA GATCGCGCTG CAGCCGCCGC CCGGGCAGAC GGCAGGCCCC GCACCGATGC TCGGCATCTG GCAGATGGGC ATTCCGAAGG ATGCGCCGCA CGCGAAGCTC GCGCAGGACT TCCTCGCTTA CCTGACCGCC CGCGACACGC AGACGCGCCT CGCCGGAATC GGCATTCCGC CGACGCGCCG CAGCGTGTTC GCCGATCCTG CGCTGGTGCG CCAGTACCGT TGGTATCCCG ATCAGCTGAA GGCGCTCGAA GCTGGCCGTG CGCGGCCGCG CGTGAAGGAC TGGCAGCAGG TCGAGAGCAT TCTCGGCGAC CAGCTGCAGC TCGCGCTGAC CGGCCAGGCT GCACCCGACG CCGCGCTGCG TCAGGCGCAG CAGAAGATCG CTCAGGCGAT GGCCGCGGCC GGCAAGTGA
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Protein sequence | MTLLSRLRAL SAVVALSFAA SHSFAADLVI AGRDDIYGKG LADAVAGFTK LHPGTDVELL KLPNANLYQK LKLSMREGTG TYDLVMMDDT WAPEFIGHGW LKPLPASLAD ADLVPSAVAL GRNAAGALYA LPIVGNVEMF AYRKDLLAKY KLQPPRNWDD VLKIAQTVGG ADKSVSGVVF RGTKGNPVVT GFLPILWAYG GDVFDRAGNV TIDSRESQAA LKTFLALKPS APKDVDVYGA AEVRDALQRG TAAQSIEVWP AWIPALDDPK QSRVVGQIAL QPPPGQTAGP APMLGIWQMG IPKDAPHAKL AQDFLAYLTA RDTQTRLAGI GIPPTRRSVF ADPALVRQYR WYPDQLKALE AGRARPRVKD WQQVESILGD QLQLALTGQA APDAALRQAQ QKIAQAMAAA GK
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