| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4660 |
|---|
| Symbol | |
|---|
| ID | 6180845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1775488 |
|---|
| End bp | 1776741 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641684419 |
|---|
| Product | ABC-type sugar transport system periplasmic component-like protein |
|---|
| Protein accession | YP_001811330 |
|---|
| Protein GI | 172063679 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTG CTCGCAGAGC ACTCGCCGTT GCCACCGTGC TGGCGTTCGG CATCACCGCC
CCTGTCCACA GCCAGGCCAA GGCAAAGATC TACACGCTGC TGCCGAATAC GGCACTGTCG
GGTGTGGTGG ATCCAGCCCT GCCCGATCGA ACGGCGGTCC GCAAGGCATG GCCGAAGCAG
CCGGCCAATC CGAACCAGCT AAAAATAGGC TGGACCGACA TCACGCTGGG CAATCCGTGG
TTCGTCGAGC TCATCAAGGG GGCACGGCAG AGTGCGGCGA AATACGGTTA CTCGATCGAC
GTGCAGGTGG CCGACGGCGA CCTGCAGCGC CAATGCGCGC AGATCGACAA CTTCGTCACG
CGCAAAATGG ACGTCATTGT GGTCGATCCG ACCGATACGC TGGGCGTGTC CGCATGCATC
AATCGCGCCG TCGATGCCGG CATTCCAGTC GTCACCGTCG GCACCACGCC GGACGCGAGC
GCCCGAGTGC TCACCACACT GCTTGGCAAC CCCTATGCAA GCGGTTTCGA GGTAGGCCGG
TACGTGGCGA AGGAGGCAGG CAAAGACACG CCGATCGACG CAGCCGTCGT CATCGGCGTG
CTCGGAAACT CGACGTCGGA AAGCCGCATC AACGGACTGA TCGCGGGCAT CGTCGATCAG
CGCATGCGCG AGCGCAACAC AAGCGCGAGC CGAGAGGACG CCATGTTGCG CGGCTTCGAA
CTGTTCCAGA CCTTGAAGAA AACCGGCAAG CTGAGCGCCC CGGACATCAA GTTCAACGTA
CTCGCGCTGG GCGTAGGCAA GTGGACCGAG GAAGGCAGCC TCGCAGCAAC GGAAGATATT
CTCTCCGCGC ACGGCAGCAA GCTGAATTTC ATCCTCTCCG AGAACGACTT CATGGGGCTC
GGCGCATTGC GCGCCGTACG AAACATGGGC AAGCAGGGGA AGATACGCAT CGCCGATGCA
GCCGGTGGTT ACCGTGGAGA GCTCGATCAG ATCAAGAAGG GCAACATCCT CGTGTCCGGC
GAAAACTCCG GCGAGCAGAC CGGTGTGGCT GCCATCGAAT TCATCCACAA CGCGTTCACG
CGGCGCGTCG ATGCGAACAA TCTGCCCATG GGCTCCGGTT TCCCGCCGGC AATCATCACG
CAAGGCAACG TCGACCAGAA GATCGATCCG AATCCGGCGA ACCTCTTCTA CAAGTACACG
ATTCCGCCCG TCCGGTCGAT TTCGGAGATT CGGGCGCAAG GCGCAAGCAA CTGA
|
|---|
| Protein sequence | MKVARRALAV ATVLAFGITA PVHSQAKAKI YTLLPNTALS GVVDPALPDR TAVRKAWPKQ
PANPNQLKIG WTDITLGNPW FVELIKGARQ SAAKYGYSID VQVADGDLQR QCAQIDNFVT
RKMDVIVVDP TDTLGVSACI NRAVDAGIPV VTVGTTPDAS ARVLTTLLGN PYASGFEVGR
YVAKEAGKDT PIDAAVVIGV LGNSTSESRI NGLIAGIVDQ RMRERNTSAS REDAMLRGFE
LFQTLKKTGK LSAPDIKFNV LALGVGKWTE EGSLAATEDI LSAHGSKLNF ILSENDFMGL
GALRAVRNMG KQGKIRIADA AGGYRGELDQ IKKGNILVSG ENSGEQTGVA AIEFIHNAFT
RRVDANNLPM GSGFPPAIIT QGNVDQKIDP NPANLFYKYT IPPVRSISEI RAQGASN
|
|---|
| |