| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4616 |
|---|
| Symbol | |
|---|
| ID | 6181389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1719815 |
|---|
| End bp | 1725325 |
|---|
| Gene Length | 5511 bp |
|---|
| Protein Length | 1836 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641684375 |
|---|
| Product | PAS sensor protein |
|---|
| Protein accession | YP_001811286 |
|---|
| Protein GI | 172063635 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0515] Serine/threonine protein kinase
[COG2205] Osmosensitive K+ channel histidine kinase
[COG3899] Predicted ATPase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGATA CCGCCCCCTC CGTCATCCCT GAAGACGACG GCATCTCTCA CTCCCGCGCA
TGCATCACGA ACGCCGAAGG GCGGCGCATC CCGGTCGTCG TCGCCCGGCC GCGACGCGGT
GCATCCAGCA CGATCGCCGT CGAACATCTA CTGAACGAAT ACCGGATGCG CGACCAGCTG
GACGGCGCGT GGGCGTTGCG CCCGCTCGAA TTGCAGCGAC AAGGCGACAG CGTCGCGCTC
ATTCTTGAGA ACGCCGCCGG CGTCAGCCTC GCGCAGCTAT TGAGCGAGCC GCTGGACATC
CGACGCTTTC TGAATATCGC TCTTCAGAGC GTCGTCTCCG TCGGCCATAT GCACGCCGCC
AAGATCGTTC ACCGCGATCT CAAACCCTCT CACCTGTACG TTGACGAACC CGGCGGCCGT
GTGCGGCTCA CCGGCTTCGG GATCGCGCTT GGCGGCCAGG ATCGTCTCGA GATGGCAGAT
CACCCGGAAA TCATTGCCGG TACGATGGCC TACATGGCGC CTGAGCAAAC GGGCCGCATG
AATTGGCAGA TCGACACGCG CAGCGATTTG TACAGCATGG GTGTCGTGTT TTATCGCATG
TTGACCGGGC AACTGCCATT TTCCGCAACC GCTCCGATGG AGTGGATACA CAGTCACACG
TCGCGCACGC CCGTCGCGCC CCATCTGCGC CACGGACTCG TCGATCCCCA GTTGTCGGCG
ATCGTCATGA AATTGCTCGA GAAATGCCCC GACGAACGCT ATCAAAGCGC GGCAGGACTG
GAGCGGGACC TGCGTCGATG CATGGCGGAG TGGTCAGCGA GCGCGACGAT ATCTCGGTTC
GACTTGGGCG TCGCCGATCT GCCTGAGCGA CTTTCCGGAC CGGTCAAGTT GTACGGTCGG
GACCAGGAAC TGGCGCGACT GACCGGCGCA TTTTCACGGG CCATGCTGGG GGGATCCACC
GAGCTGGTGC TGATTTCCGG TTATGCCGGT ATCGGCAAAT CGTGTCTCGC GCGCGAGCTG
CAAACTGCGG TCGGCACGTT TCAAGGGACT TTCGCCAGCG GAAAGTGCGA CCAGTACAAC
AGCGACGTAC CGTATGCCGC GGTGGCGCTT GCGCTGAAAG GCATGATCAA GTCCGTGTTC
GCCAGAGGCG AAGACGATGT ACGCCGGTGG CGCGGCGCGA TTCTCGATGC ACTTGGGCAG
AACGGAAGCC TCGTCACGGA CCTCGTGCCG GATCTCGAAC TGCTGATCGG CGAGCAACCC
AGCGTACCGG AGTTGCCGCT GCAACAGGCA CAGGTCCGTT TCCAAGGGGT GTTGCGGGAC
CTCATGCAGG TGTTCGCGAC GCTGAGCCCT CCCCTGGCGC TCTTTATCGA CGATCTTCAA
TGGGCAGACG CCGCAACGCT CGATCTCATC GAACATATCG CGCACCATTC CGACATCCGG
CACCTGCTGC TGATCGGTGC GTATCGCCAC AATGCAGTCG ATGCCGATCA TCCACTGAGG
CGAAAGATCT CCACCGCCAA AGCAGCGGGA ATCGCCGTTC ATGAAATTGA CCTGCTGCCA
TTGACTGCCA AGGATGTCGC GCCCATTCTT CGCGACATCC TGCACTCCAC CGACAAGTTG
GTCGAGCCGC TTGCGAGAGT CGTATATTCG AAGACGGCAG GCAACCCGTT CTTCGTCGTT
CAGTTCCTGC ATGCACTCGC GGAAGAGAAC GTGCTCGTCA TCGATCCGGC CGCCGGACGC
TGGTCATGGA ACGTTCAAGA CGTCCGGAGC GCCCGCTATA CGGACAACGT CGCGGACCTG
ATGGCTATCC GGCTCGGCCG GCTTCCACCA AACTGCAAGG ACGCGCTCCG CGACCTTGCG
TGCCTGGGCA GCGCTGCGAC GACCTGCAAT CTGGCGATCG TGCGGAACAC CAGCGAAGAA
GCGTTGCACG GCGAGCTTCA GGCCGCCATC CGTCAACAGC TCGTCGAACG CGTCGGAAAT
ATCTATCGAT TCGCTCACGA CCGGATTCAC GAGGCAGCAT ATTCGCTCAT CCCTGCTTGC
TCGCGCGCGG AAATACACCT GATGGCTGCG CGGCACCTGT TGCCGCATCT CGTAGAAGGG
GCCGACGAAG GGCTGTTGTT TGAAATCGTC GGCCAATTCA ATCGCGCCGG AGACGAACTC
ATCTTGCCGG AAGAACGGCA CGAAGTCGCC ATGCTCAATT TGCGAGCCGG CATTCGAGCG
AAGCGTTCCG CCGCGTACGA TACCGCGCTT CGCTACTTCA ATGCCGGCGC GGCGCAACTA
AGCGCTACAC CAACCAACGA CCCAGCCGGT ATTCATTTCG AATTCGAACT CGAATTTGCC
GAATGTGAAT TCCTGACCGG ACAACTCGAG CTGGCGGAAC GGCGCCTGGT CGCATTGCCG
ACACAAGGGA TGGACCCGGT CGAACTCGGT CGCGTCACGG TACAACGGAT GGACGTGTAC
ACGGCTCTCG ACCAAAGCGA CGATGCGATC GCCGTCGCGC TCGAATATCT ACGTTGTGTC
GGTATCACGT CGTCGGCACA TCCGTCCGAT CAGGACGTGC AAGACGAATA TGCTCAACTC
CACCGGCGTG CAGCCAACCT GACAGTCGAC GACATCGCCG GATTGCCGGC CATGGTCGAC
CCGCTGGCGT TGACTACGCT GGAGGTACTG ACCCGCCTGC TTTCCGCGGC ATGCTTCACC
GATTTCAATC TGAACTCCCT GATTACGTGC AAGGCCATCA ACCTCAGCCT GACCAGCGGA
AACTGTGACG CGTCCTGCGT GGCGTTCTGC ACGCTTAGCC GGACCGCGGG ACCGCGTTTC
GGCGATTTCG ACCTGGGGAT CCGCTTCAGC CACGCGGGCT ACCGCATTGC CGAACGCAAC
GCACAACACC GCTACCATGC CAGCACGTCC ATGGTGTTCG CGATCTTCAC GAAGTGCTGG
GCCGAGCATG TTCGCGCGTC CAAGGACACA CTGCGCTATG CGTTTTCCGC AGCCAACAAG
ACCGGGGACC TGTTGTACGC ATCGTATTCT CTGAATTGTC TGAATACGGT ATTGCTGTTC
GCGGGCGATC CGCTTTCCGC CGTCCACAAT GAAGCGGAAC GCGGCCTTGC GTTTGCCCGG
AACGCTCAAC ATGGTCTGGT CGTCGACATC ATCTCGACAC AGCTCGCGTT CATCGAAAGC
CTGCGAGGGC GGACGAGAAA GCTCGGGACG TTCGACAGCG AGCGCTTCAA TGAACAGGCA
TTCGAATTCC GGCTTTCGAA TCGTCCCGGG CTTGCCATCG CGGAGTGCTG GTACTGGACG
CGAAAAATGC AAGCACGTTA TCTGGCAGGC GACCACGACA CCGCTTTCGA CTCGCTCCTC
CGTGCCGAGC CGTTGATATG GACCTCTTCG ATGTTCCTGG AAGAGGCCGA ATTTCATTAC
TACGCTGCGC TCACGTTGGC CTCGACGCTG GAGCACGTTA CGCCTGCGAT GCGTGCCCGC
CAGTTGGAGC GACTCACCCG GCACCAGGCG AAGCTGAATG TGCTGGCAAG CAACTTTCCC
CAGAACTTTG ACAATCGCGC AGCGCTCGTG AATGCCGAAA TCGCGCGCAT CGAATCGCGC
ATACTCGATG CGGAGCGGCT TTATGAACAG GCGATCAATT CCGCACGCGC GAGCGACTTT
CCGCATCAGG AAGCGATTGC GAGCGAACTG GCTGCGCGTT TTTACCAGTC CCGAGGCTTG
TCGATCATCA GCGATGCCTA CTTGCGCAAT GCACGTTACG GGTACCTGCG TTGGGAGGCG
CCGGGAAAAG TCCGGCAACT CGACGACGCA TACCCGCATC TGAACGCCGA CCCACGTGGC
AGCAACGCGC ACGAGACGAT GCGGTCGACG GCCGGCGAGA TCGACTACTG GATGCTGATC
GACGTTTCGC AGCGGGTGTC GTCCGAGATC GTTCTCGAGA ATGTCGTCGA TACGTTCATG
AGAGCTGCGC TGACTCACTC CGGCGCGGAT CGCGCCATTC TGATTCTCAC CGCGGACGAT
GGTGCCGCGA AGATCCAGGC CGAGGCGACG GTTCGCGGCG AGGCGGTATG CATTCAGCAG
GAAAGCTCGC CGCTCGACCC GGACCGGGTC CCGACGGCGA CGATCAATTA CGTGATGCGG
ACTCGGGAAG TGCTGTCGAT ACCCGATGCA TCAAAGGATC CGATATGTGC GACCGATGCC
TACACGGTCA CACATCGAGT GCGCTCGATC CTGTGCATTC CTCTCGTTCG TCGACACACA
TTGGTCGGCA CGCTTTATCT GGAAAACAGG CTTTCCACCG GCGTATTCGC GCCTGCCCGC
CTGGCCTCGC TCGGCGTTCT CGTTTCGCAG GTCGCCATTA CGCTGGAGAA CGCGCGCCTG
TATCGGGAGC TGTCCGACCG CGAAGCGCGG ATTCGACGCC TCGTGGACGC GAACATCATC
GGCATCTTCA TCTACGCGCT GGATGGCACG ATATTGGACG CGAATGCCGC CTTTCTCGAG
TTGCTCGGCT ACAGTCGCGA CGAGCTCGAC CATCGCCAGC TGAACTGGAG GGACATCACG
CCACCGGAAT GGATTCAGGT CGACTTCCAG ATCCACGAAC CGGTACTTCG CGCGACCGGC
GTGCTTGCAC CGATCGAGAA AGAGTATTTT CGCAAGGACG GGAGCCGCGC GCCTGTCCTT
GTCGGGGCCG CGATGTTCTC GCCGACGGGC GATCAAGGGG TCGCATTCGT TCTCGATCTG
AGCGAAAGCA AGCGCGCGGA CGCACGTGCG CGAGACAGCG AAATCCGGTT CAGCGAAATG
CAGCAGGAAC TCGCGCACGC GAACCGGGTA TCGACCGTCG GACAGTTGAC GGCCATGATC
AGTCACGAGG TGAAACAGCC GATCGCCGCG ATGTCCGCGA ATGCCGACGC CGCGCTACGT
TGGCTATCTG CTCGCCCGGC AAACGTCGAC CGCGCAGCCA GAGCGCTCGA ACTTATCGTG
CGCGATACCT TGCGGACCGG TGACATCATC GACCGCATCA GGAACCTCGT GCGCAAATCT
CCGGTACGAA AGGAGCAGGT GGACCTCAAC GAGGCGATCC TCGAAGTCCT GTTCATGACA
CGGCGAGACG CGGAGAAAAA CGGCATCAGC ATCGAAACGA CGCTTGCCGC CCCGCCTCCG
ACCGTGACCG GCGATCGGGT ACAGCTTCAG CAAGTCGTGC TCAACCTCGT CGCCAATGCG
ATCGAGGCGA TGCACGCCGT CAACGAAGGA CGCCGGCTAC TGTCGATCTC CACATCGCGC
AGCGGCGAGG GCACGGTGGA CATAAAGGTG AAGGACTCGG GCCCCGGTAT GTCGGCCGCA
CATATGGAAC GGCTTTTCGA GCCATTCTTC ACCACCAAGG ATACGGGAAT GGGCATCGGC
CTCTCGGTCG CTCATTCGAT CGTTCAGGCC CACGACGGAC AACTGCGGGC AACCCTCCAC
GAACCGTCCG GCACGACATT TCACATCACG CTTCCATCGT CGGCATCGTA G
|
|---|
| Protein sequence | MTDTAPSVIP EDDGISHSRA CITNAEGRRI PVVVARPRRG ASSTIAVEHL LNEYRMRDQL
DGAWALRPLE LQRQGDSVAL ILENAAGVSL AQLLSEPLDI RRFLNIALQS VVSVGHMHAA
KIVHRDLKPS HLYVDEPGGR VRLTGFGIAL GGQDRLEMAD HPEIIAGTMA YMAPEQTGRM
NWQIDTRSDL YSMGVVFYRM LTGQLPFSAT APMEWIHSHT SRTPVAPHLR HGLVDPQLSA
IVMKLLEKCP DERYQSAAGL ERDLRRCMAE WSASATISRF DLGVADLPER LSGPVKLYGR
DQELARLTGA FSRAMLGGST ELVLISGYAG IGKSCLAREL QTAVGTFQGT FASGKCDQYN
SDVPYAAVAL ALKGMIKSVF ARGEDDVRRW RGAILDALGQ NGSLVTDLVP DLELLIGEQP
SVPELPLQQA QVRFQGVLRD LMQVFATLSP PLALFIDDLQ WADAATLDLI EHIAHHSDIR
HLLLIGAYRH NAVDADHPLR RKISTAKAAG IAVHEIDLLP LTAKDVAPIL RDILHSTDKL
VEPLARVVYS KTAGNPFFVV QFLHALAEEN VLVIDPAAGR WSWNVQDVRS ARYTDNVADL
MAIRLGRLPP NCKDALRDLA CLGSAATTCN LAIVRNTSEE ALHGELQAAI RQQLVERVGN
IYRFAHDRIH EAAYSLIPAC SRAEIHLMAA RHLLPHLVEG ADEGLLFEIV GQFNRAGDEL
ILPEERHEVA MLNLRAGIRA KRSAAYDTAL RYFNAGAAQL SATPTNDPAG IHFEFELEFA
ECEFLTGQLE LAERRLVALP TQGMDPVELG RVTVQRMDVY TALDQSDDAI AVALEYLRCV
GITSSAHPSD QDVQDEYAQL HRRAANLTVD DIAGLPAMVD PLALTTLEVL TRLLSAACFT
DFNLNSLITC KAINLSLTSG NCDASCVAFC TLSRTAGPRF GDFDLGIRFS HAGYRIAERN
AQHRYHASTS MVFAIFTKCW AEHVRASKDT LRYAFSAANK TGDLLYASYS LNCLNTVLLF
AGDPLSAVHN EAERGLAFAR NAQHGLVVDI ISTQLAFIES LRGRTRKLGT FDSERFNEQA
FEFRLSNRPG LAIAECWYWT RKMQARYLAG DHDTAFDSLL RAEPLIWTSS MFLEEAEFHY
YAALTLASTL EHVTPAMRAR QLERLTRHQA KLNVLASNFP QNFDNRAALV NAEIARIESR
ILDAERLYEQ AINSARASDF PHQEAIASEL AARFYQSRGL SIISDAYLRN ARYGYLRWEA
PGKVRQLDDA YPHLNADPRG SNAHETMRST AGEIDYWMLI DVSQRVSSEI VLENVVDTFM
RAALTHSGAD RAILILTADD GAAKIQAEAT VRGEAVCIQQ ESSPLDPDRV PTATINYVMR
TREVLSIPDA SKDPICATDA YTVTHRVRSI LCIPLVRRHT LVGTLYLENR LSTGVFAPAR
LASLGVLVSQ VAITLENARL YRELSDREAR IRRLVDANII GIFIYALDGT ILDANAAFLE
LLGYSRDELD HRQLNWRDIT PPEWIQVDFQ IHEPVLRATG VLAPIEKEYF RKDGSRAPVL
VGAAMFSPTG DQGVAFVLDL SESKRADARA RDSEIRFSEM QQELAHANRV STVGQLTAMI
SHEVKQPIAA MSANADAALR WLSARPANVD RAARALELIV RDTLRTGDII DRIRNLVRKS
PVRKEQVDLN EAILEVLFMT RRDAEKNGIS IETTLAAPPP TVTGDRVQLQ QVVLNLVANA
IEAMHAVNEG RRLLSISTSR SGEGTVDIKV KDSGPGMSAA HMERLFEPFF TTKDTGMGIG
LSVAHSIVQA HDGQLRATLH EPSGTTFHIT LPSSAS
|
|---|
| |