Gene BamMC406_4512 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4512 
Symbol 
ID6180567 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp1615651 
End bp1617165 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content69% 
IMG OID641684273 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001811184 
Protein GI172063533 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACCG ATACTCTCCT TGCTCCGCCG GCCGCCGAAG CGGCCCGCCG CGACACGCCG 
ACCGGGCTGG TGATCGCCGC GCTGCTGCTC GTCATGCTGC TGTCCGCGCT CGACCAGACG
ATCGTGTCGA CCGCGCTGCC GACGATCGTC GGCGAGCTCG GCGGCCTCGA TCAGCTGTCG
TGGGTCGTCA CCGCGTACCT GCTGTCGTCG ACGGTCGTGC TGCCGCTGTA CGGCAAGCTC
GGCGATCTGT ACGGCCGCAA GATCGTGCTG CAGGCCGCGA TCGTGCTGTT TCTCGCCGGC
TCCGCGCTGT GCGGCATCGC GCAGGACATG ACGCAGCTGA TCGTGCTGCG CGCGCTGCAA
GGGCTCGGCG GCGGCGGGCT GATGGTCGTG ACGATGGCCG CGATCGGCGA CCTCGTGCCG
CCCGACCGCC GCGCGCGCTA CCAGGGGATG TTCGGCGGCG TGTATGGCCT CGCGACGATC
GTCGGGCCGC TGCTCGGCGG CTTCCTGGTC GAACATCTGT CGTGGCGCTG GATCTTCACG
ATCAACCTGC CGCTCGGCGC GCTCGCGCTC GCGGTGATCG TCATCGTGTT CCGGCCACAC
ACCGAGCACG TGAAGCACCG CATCGACTAC ATGGGCGCCG CGTTCCTCGC GACGGCCCTC
ACCTGCGTGA TCCTGTTCAC CAGCGAAGGC GGTTCGCTGC TGCCGTGGTC GTCGCCGCAG
CTGTGGATGA CGCTCGTGCT CGGGCTGGTC GCACTCGGCG GCTTCGTCTA CGAGGAGCGG
CTCGCGGCCG AGCCGATCAT GCCGCTCGAA CTGTTCCGTC AGCGCACCTT CGTGCTGATG
AGCCTGATCG GCTTCGTCGT CGGCATCGCG CTGTTCGGTT CGGTCACGTT CATTCCGCTC
TATCTGCAGG TCGTGAAGGG CTCGACGCCG TCGCAGGCCG GGATGCAGCT GCTGCCGATG
ATGGGCGGGA CGCTCGCGAT GTCGGTCGCG AGCGGCCGGC TGATCTCGCG GTTCGGCACG
TATCGCCCGT TTCCGATCGC GGGGACGCTG CTCGGCGGCA TCGCGATGGC CCTGCTGTCG
ACGCTGTCGC TCGACACGCC GCTGCACACC ATGTACGCGT ACATGGCGCT GCTCGGGATC
GGGCTCGGCA TGGTGATGCC GGTGCTGACG CTCGCCGTGC AGAACACGGT CGAATTCCGG
CACATGGGTG TCGCGACGTC GGGCGCGACG CTGTTCCGCT CGATCGGCGG GTCGCTCGGC
GTCGCCGCAT TCGGCGCGCT GTTCTCGCAC GGGCTGCAGT CGCGCCTCAC GCAGGCGCTG
GCGGCCGGCA CGGAACTGCC GCCCGCGCTC GGCCCGGAGG CCGTGCACCA GTTGCCGGAG
GCGGTGCGCG CTGCGTACCT GCACGCGTTC GCCGGGTCGC TGCATGTGGT GTATCTGTCG
GCGGCGGGCG TGATCGCGAT CGCCTTCGTG CTCGCGTGGT TCGTCCAGAG TGCGCCGCTG
CGCACGCATC ACTGA
 
Protein sequence
MRTDTLLAPP AAEAARRDTP TGLVIAALLL VMLLSALDQT IVSTALPTIV GELGGLDQLS 
WVVTAYLLSS TVVLPLYGKL GDLYGRKIVL QAAIVLFLAG SALCGIAQDM TQLIVLRALQ
GLGGGGLMVV TMAAIGDLVP PDRRARYQGM FGGVYGLATI VGPLLGGFLV EHLSWRWIFT
INLPLGALAL AVIVIVFRPH TEHVKHRIDY MGAAFLATAL TCVILFTSEG GSLLPWSSPQ
LWMTLVLGLV ALGGFVYEER LAAEPIMPLE LFRQRTFVLM SLIGFVVGIA LFGSVTFIPL
YLQVVKGSTP SQAGMQLLPM MGGTLAMSVA SGRLISRFGT YRPFPIAGTL LGGIAMALLS
TLSLDTPLHT MYAYMALLGI GLGMVMPVLT LAVQNTVEFR HMGVATSGAT LFRSIGGSLG
VAAFGALFSH GLQSRLTQAL AAGTELPPAL GPEAVHQLPE AVRAAYLHAF AGSLHVVYLS
AAGVIAIAFV LAWFVQSAPL RTHH