Gene BamMC406_4442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4442 
Symbol 
ID6180763 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp1528880 
End bp1530499 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content65% 
IMG OID641684203 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_001811114 
Protein GI172063463 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.795175 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGATA CCGATACGCA AAAGGCCGAC GTCGTGGTCG TCGGGTCCGG TGTCGCGGGC 
GCGATCGTCG CGCACCAGCT CGCGATGGCG GGCAAGTCGG TGATCCTGCT CGAAGCAGGC
CCGCGCATGC CGCGCGGCGA GATCGTCGAG CGCTTCCGCA ATCAGCCGGA CAAGACGGAC
TTCATGGCGC CGTACCCGTC GAGCACGTGG GCGCCGCATC CGGAATACGG CCCGCCGAAC
GACTACCTGA TCCTGAAGGG CGAGCACAAG TTCAACTCGC AGTACATCCG TGCGGTGGGC
GGCACGACAT GGCACTGGGC CGCGTCGGCG TGGCGCTTCA TCCCGAACGA CTTCAAGATG
AAGACGGTGT ACGGCGTCGG CCGCGACTGG CCGATCCAGT ACGACGATCT CGAGCATTAC
TACCAGCGCG CCGAGGAAGA GCTCGGCGTG TGGGGCCCCG GTCCCGAGGA AGACCTGTAC
TCGCCGCGCA AGCAGGCGTA CCCGATGCCG CCGCTGCCGT TGTCGTTCAA CGAGCAGACG
ATCAAGAGCG CGCTCAACGG CTATGACCCG AAGTTCCACG TCGTGACCGA GCCGGTCGCG
CGCAACAGCC GCCCGTACGA CGGCCGGCCG ACTTGTTGCG GGAACAACAA TTGCATGCCG
ATCTGCCCGA TCGGCGCGAT GTACAACGGC ATCGTGCACG TCGAGAAGGC CGAGCAGGCG
GGCGCGAAGC TGATCGACAG CGCCGTCGTC TACAAGCTCG AGACCGGTCC GGACAAGCGC
ATCGTCGCGG CGATCTACAA GGACAAGACG GGCGCCGACC ATCGCGTCGA AGGCAAGTAC
TTCGTGGTGG CCGCCAACGG CATCGAGACG CCGAAGATCC TGCTGATGTC GGCGAACCGC
GATTTCCCGA ACGGCGTCGC GAACAGCTCC GACATGGTCG GGCGCAACCT GATGGACCAC
CCGGGCACGG GCGTGTCGTT CTACGCGAGC GACAAGCTGT GGCCGGGCCG CGGCCCGCAG
GAGATGACGT CGCTGATCGG TTTCCGCGAC GGCCCGTTCC GCGCGACCGA AGCCGCGAAG
AAGATCCACC TGTCGAACAT GTCGCGCATC AACCAGGAGA CGCAGAAGAT CTTCAAGGCC
GGCAAGCTGA TGAAGTCCGG CGAGCTCGAC GCGCAGATCC GCGATCGTTC CGCGCGCTAC
GTGCAGTTCG ACTGCTTCCA CGAAATCCTG CCGCAGCCCG AGAACCGCAT CGTGCCGAGC
AAGACGGCCA CCGACGCGAT CGGCATTCCG CGCCCGGAAA TCACGTATGC GATCGACGAC
TACGTGAAGC GCGGCGCGGT GCATACGCGC GAGGTCTACG CGACCGCCGC GAAGGTGCTG
GGCGGTACCG ATGTCGTGTT CAACGACGAG TTCGCGCCGA ACAACCACAT CACGGGCTCG
ACGATCATGG GCGCGGATGC GCGCGACTCG GTCGTCGACA AGGACTGCCG CACGTTCGAC
CATCCGAACC TGTTCATCTC GAGCAGTTCG ACGATGCCGA CCGTCGGTAC GGTGAACGTG
ACGCTGACGA TCGCGGCGCT GGCGCTGCGG ATGTCGGACA CGCTGAAGAA GGAAGTCTGA
 
Protein sequence
MADTDTQKAD VVVVGSGVAG AIVAHQLAMA GKSVILLEAG PRMPRGEIVE RFRNQPDKTD 
FMAPYPSSTW APHPEYGPPN DYLILKGEHK FNSQYIRAVG GTTWHWAASA WRFIPNDFKM
KTVYGVGRDW PIQYDDLEHY YQRAEEELGV WGPGPEEDLY SPRKQAYPMP PLPLSFNEQT
IKSALNGYDP KFHVVTEPVA RNSRPYDGRP TCCGNNNCMP ICPIGAMYNG IVHVEKAEQA
GAKLIDSAVV YKLETGPDKR IVAAIYKDKT GADHRVEGKY FVVAANGIET PKILLMSANR
DFPNGVANSS DMVGRNLMDH PGTGVSFYAS DKLWPGRGPQ EMTSLIGFRD GPFRATEAAK
KIHLSNMSRI NQETQKIFKA GKLMKSGELD AQIRDRSARY VQFDCFHEIL PQPENRIVPS
KTATDAIGIP RPEITYAIDD YVKRGAVHTR EVYATAAKVL GGTDVVFNDE FAPNNHITGS
TIMGADARDS VVDKDCRTFD HPNLFISSSS TMPTVGTVNV TLTIAALALR MSDTLKKEV