Gene BamMC406_4390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4390 
Symbol 
ID6179942 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp1463941 
End bp1465065 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content66% 
IMG OID641684151 
Productextracellular solute-binding protein 
Protein accessionYP_001811062 
Protein GI172063411 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.243685 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.0624884 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATACGG GGAATTCGGA CGGGGACCGA TTGGTCAGGG GAATCGGCGC GCACCGGCGT 
GCGCGCGGTG CCGTGTGCCG GTTGTTTGTC GTCTTGACAC TGGGCCTGCC GGGCCTGCCT
GCGTGTGCCG CGTCTCCCGA AACCGTCGGC GACAACGTGC TGCGTGTGCT CGCGTGGCCC
GGCTATGCGG ACAGCGATGT CGTCAATGCA TTTGAGACGC ACTTTCATGT ACGCGTCGAA
GTGACGTTCG TCGATTCCGA CGAAGCGTTG TGGACGCGGA TGCACAGCGC ATCGCCGCCG
CCGTACGACG TGCTCGCGGC CAACACGGCC GAGATCCAGC GCTACGCGCG CGAAGACCTG
CTTACACCGA TCGACCTGTC GCAGATCCCG AACCGCCGGC GGCAACTGCC GAATTTCCAG
CAGCTTGCGA CGATCGGCGG GCTCGTGCGC AACGGCTCGA CGTACGCGAT TCCGTTCACG
TATTCGTCGA TGGGGCTGAT CTACGATCGC AAGCAGGTGC CGGCGCCGCC GCGCTCGATG
CTCGAGCTCT GGAACCCGCG CTACCGCGGC AAGGTGCTCG ACTTCAACAG CGCGCAGCAT
AATTTTTCGT TCACCGCGCT CGCGCTCGGC TATGCCGATC CGTTTCACCT GTCGCCCGCG
CAGACGCTTG CCGTCGCGCA CAAGCTGATC GACCTGCGAC GCAACCTGCT CACGTATTAC
ACGCTTCCCG AAGAAGCGAC CGCGCTGTTC ATCCGGCATC GCGCGGCGCT GATGTTCGGC
AACTACGGCA CGCAGCAGGT CGAGCAACTG CGTCGCGCCG GCGCGGATGT GGGCTACGTG
ATTCCGGACG AAGGCGCGCT CGCGTGGCTC GACTGCTGGG GCGTCACGCG TGGCGCCGAG
CATCGCGAGC TCGCGTTCGC ATGGATCAAT TACATGCTCG AACCGGTGAT CGGCGCGCTG
CTGACCGAGC GCCAGGGGCT CGCGAATACG CTCGCGCCGC CACCCGGCCT CCAGACCGGC
CACCAGCACC TCGTGTGGCT CCAGCCGGTC GAGGACATCG CGCGGCGCGA GTCGCTGTGG
AGCCGCATCG TGTCGGGCGA CCGGCCGGAG TGGTTCGAAA AATGA
 
Protein sequence
MHTGNSDGDR LVRGIGAHRR ARGAVCRLFV VLTLGLPGLP ACAASPETVG DNVLRVLAWP 
GYADSDVVNA FETHFHVRVE VTFVDSDEAL WTRMHSASPP PYDVLAANTA EIQRYAREDL
LTPIDLSQIP NRRRQLPNFQ QLATIGGLVR NGSTYAIPFT YSSMGLIYDR KQVPAPPRSM
LELWNPRYRG KVLDFNSAQH NFSFTALALG YADPFHLSPA QTLAVAHKLI DLRRNLLTYY
TLPEEATALF IRHRAALMFG NYGTQQVEQL RRAGADVGYV IPDEGALAWL DCWGVTRGAE
HRELAFAWIN YMLEPVIGAL LTERQGLANT LAPPPGLQTG HQHLVWLQPV EDIARRESLW
SRIVSGDRPE WFEK