| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4389 |
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| Symbol | |
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| ID | 6179941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1462160 |
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| End bp | 1463944 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641684150 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001811061 |
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| Protein GI | 172063410 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.162634 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGGC TCGGGCTCAC GTCGAAGCTG TCGGTGCTGT TCGCCTGCAT CGGCGTGATC
GCGTCCGGCA CCACCGGCTA CTACACGTAC CGCGCGAACC GGACGATGCT CGTGCAGGAA
GCGCAGCACA GCCTGCTGAT GTCGACGCAC TTGCTGGGAC AGCGCTTCAC GACCGCGCTG
TCCGACGTGG CCGACGATGC GCTCGTGCTC GCGCAGTTGC CGTCGTCGGC GCTCGTCGCC
GGCGGCGACA GCGCCGATCG CGCGCCGCGC ACGCGGCTCG AGCAGGTGTA TCGCAGCTTC
ATGAGGAATC ACCCCGAGTA TCTGCAGATC CGGTTGATCG CACGCGGCGA CTACGGGCTC
GAACGGATCC GCGTCGATCG CGACGCGCGC GGCATCGTCG TGCTGCCGGA GAATGCATTC
CAGGAGAAAG GGCAGTTTTC CTACGTGATC GATACGCTCG CGACGGCGCC CGGTCATATC
TACCTGTCGC CGATCGAAAT CAATCACGAG ACCGGTTCGC ATGCGGCCGA AGGGTTGCCG
ATCCTGCGCG TGGGCACGCC GGTCGTCGAC ACGGCCGGCC AGGTCGTCGG CGCGCTGGTC
GTCGACATCG AACTGTCGCG CGTGTTCGAC CGGCTCGAGC GCGATCTGCC GCAAGACTAC
GCGGTGTATC TCGCGAACGA GTGGGGCGAT TTCATCGTGC ATCCCGATCC GTCGCAGACG
TTCGGCTTCG ATCGCGGGCG GCGCGTGCTG ATGCAGGACA GCTTTCCCGC CACGCGGCTA
CTGTTCGTCG GCGCGCGCAC GAACGTGACG CTCGACGGTC TCACGCAGCC CGACGATGCG
CCGGGCCAGA TGTTCGCGTT CGTGCGCACG CCGTTCGGCA ACAGCGAGGG CAACCGCTTC
GTCGTGCTCG GCATGGCGCG TCCGCTCACG GACGTGCTGG CGCCGGCCGC GATTCTCGGC
GAACGGATCA TCCGGATGGT GCTGTTGCTG AGCGTGGCGG CGGTGATTCT CGCGATCCTG
TTCGCGCGCG CGATCACGCG GCCGTTGCAG ATGCTCGCGC GCGCGGCGAC CCACGTATTC
GACGATCCGG CCGCCGAACG GCTGCCCGTT GCACGGGCCG ACGAGATCGG CGTGCTGGCG
CGCTGTTTCG ACAGCATGCG CGTCGAGATC CGCACGCAGG TCGCGATGCT GCGCGCGAAG
CAGCTGGAGC TCACGCACCT CGCCGGTCAC GATCCGCTGA CCGGTCTGCC GAACCGCCTG
TTGTTCATGG AGCATCTCGA TGCCGCGATC CGGCATGCGG CCGCGGTGGG CGAGGGGCTG
GCGGTGATGT TCGTCGATCT CGATCGCTTC AAGCAGATCA ACGACCAGCA TGGACATGCG
GCCGGCGATC GCACGCTCGT CGCGGTCGCG AAACGGCTGA GCCAGGTGCT GCGCAGCGGC
GACATGGCCG CGCGGCTCGG CGGCGACGAA TTCATCGTGC TGCTGTCGGA CGTGCGAGCG
TCGGCGGTGA TCGGCGATAT CGCGTCGCGT ATCCAGATCG TGATGGCCGA GGAACTGGAG
TTCGGCGACC GGCTGCTGGC CGTGGGGGCG AGCATTGGCG TCAGCGAATA TCCGGCCGAC
GGCGCGTCCG CCGAGGAATT GCTGGTGAAG GCCGACGCGG CGATGTATGC GGCGAAGGCG
TCCGCGCAGT GCGCGTGCGT GCGTTATCAG GAGCTGCTGG GTGGCGGCGG CGGTGGCGTC
GATGCAGATG TGGCCGGCCG CATGGCAGCG GGTGGCGGCC GCTGA
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| Protein sequence | MIRLGLTSKL SVLFACIGVI ASGTTGYYTY RANRTMLVQE AQHSLLMSTH LLGQRFTTAL
SDVADDALVL AQLPSSALVA GGDSADRAPR TRLEQVYRSF MRNHPEYLQI RLIARGDYGL
ERIRVDRDAR GIVVLPENAF QEKGQFSYVI DTLATAPGHI YLSPIEINHE TGSHAAEGLP
ILRVGTPVVD TAGQVVGALV VDIELSRVFD RLERDLPQDY AVYLANEWGD FIVHPDPSQT
FGFDRGRRVL MQDSFPATRL LFVGARTNVT LDGLTQPDDA PGQMFAFVRT PFGNSEGNRF
VVLGMARPLT DVLAPAAILG ERIIRMVLLL SVAAVILAIL FARAITRPLQ MLARAATHVF
DDPAAERLPV ARADEIGVLA RCFDSMRVEI RTQVAMLRAK QLELTHLAGH DPLTGLPNRL
LFMEHLDAAI RHAAAVGEGL AVMFVDLDRF KQINDQHGHA AGDRTLVAVA KRLSQVLRSG
DMAARLGGDE FIVLLSDVRA SAVIGDIASR IQIVMAEELE FGDRLLAVGA SIGVSEYPAD
GASAEELLVK ADAAMYAAKA SAQCACVRYQ ELLGGGGGGV DADVAGRMAA GGGR
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