Gene BamMC406_4381 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4381 
Symbol 
ID6180695 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp1456079 
End bp1456831 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content71% 
IMG OID641684142 
ProductRNA polymerase sigma factor 
Protein accessionYP_001811053 
Protein GI172063402 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.566975 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTTCG AACCGGATGT CGACGAAACC GCCCGGGCCG ATCTCGGGCG CGTTGCCGAC 
GCGTCGTCCT GGCGCTGTCC GGTGCCCGCG CGACGCATGC AAGGAGAGCA CGACGATGAG
CTTCAGCCGG ACCGCGGGCC TACCCGCCCG CAGCAAGCGG CGTTCGCACG GCACGTTGCG
GAGCGGCCTG CGTTGAGCGA TGCCGATCCG GACGCGGAAC TCGTCGCGCG GGTCGGCGCG
CGCGACGCGT CGGCCGTGCG CGTGCTCGTC GCCCGCAAGC TGCCGCGATT GCTCGCGCTC
GCGACGCGCA TGCTCGGCGA CCGGACGGAA GCCGAAGACG TTGCGCAGGA AACCTTCCTG
CGGATCTGGA ATCAAGCGCC GCGCTGGCGG GACGGTGAAG CGCGCTTCGA CACGTGGCTG
CATCGCGTCG TGCTGAACCT GTGCTACGAC CGCTTGCGTG GACGGCGCGA GGAGCCGGTC
GACACGCTGC CCGACGTGCC CGACACGCAA CCCGAGCCGG CCGCGCAAGC GGAGTTGCGC
TCGCGCGATG CGCGCGTGCG CCAGGCGCTC GCCGCGTTGC CGCCCCGGCA GCGGGAAGCG
CTCGTGCTCC AGTACTATCA GGACATGTCG AATGTAGAGG CGGCCAACCT GATGGGCATC
ACCGTCGATG CGCTGGAAAG CCTGCTCGCG CGCGCGAGGC GCAACCTGCG CGCGCAACTG
GCCGGCGACC CACCTAGCGA GGACAAGCGA TGA
 
Protein sequence
MPFEPDVDET ARADLGRVAD ASSWRCPVPA RRMQGEHDDE LQPDRGPTRP QQAAFARHVA 
ERPALSDADP DAELVARVGA RDASAVRVLV ARKLPRLLAL ATRMLGDRTE AEDVAQETFL
RIWNQAPRWR DGEARFDTWL HRVVLNLCYD RLRGRREEPV DTLPDVPDTQ PEPAAQAELR
SRDARVRQAL AALPPRQREA LVLQYYQDMS NVEAANLMGI TVDALESLLA RARRNLRAQL
AGDPPSEDKR