| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4350 |
|---|
| Symbol | |
|---|
| ID | 6180057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1431541 |
|---|
| End bp | 1433079 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641684116 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001811027 |
|---|
| Protein GI | 172063376 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.759696 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACC TGCCACGTTA CGAAAAACTG CCGTTGTTCA ACCCGCATCG CAAGACCTTC
ACATGCGTGT ATCAGGACCA ACATGTACCG CCTGTCGATC CCCAGGCTGA ATTGTGGTTT
CAGCAGGCGC TGGCGCTCGA TAACCCGAAC ATCGATTACG ACAAGCGAGA TTACGGGAAG
ATTTATCAAC TCTACATGCA GGCCGCCGAG CGCAATCACT GGAAGGCCAT GCTTAATATC
GCCTCGATGA TATTGAGCGA CCGTCAGGGA GTGCCAACCC ACGATCCGGA AACCGCCATC
CGCTGGGTGG AAAAGGCAAT GAAACTGGGC GTGCCTGACG CCTACGACAT GATGGGCATC
TACCATCAGA ATGGGCTGGT CAAGGGCGGC GATGCCACCA GTGCCTATGC CTTCTTCCAG
CGCGCTGCCG ATATGGGCAG CCCATCCGCA CAAACATTTA TCGGAACAAA AACGGATGCG
GCACATGACG ACCCGGGAGG GGAATTCTGG GGCAATCTGC CTATCGCGAC ACAAATGCTG
GAATGTGCCT TCGCACAGGG ATTTGGGGAT GCGGCCGATG CGTTAGGACT GGTCTACGCA
AGGGACAATA CCTCCGAAGG CAAAACACGC GCTCTAAAAA TATTGCACGA CGGCGTAAAG
CTGGGAAGTG CCAAATGCGC GCATAGCCTG GCACCAGAAT TTCGCGGCCT AGACCTCACC
GACGGCACCA ACCTGGTCGG CCATATCGAC AAGGCGCGTG CGGAACGTTA CAGCAAGCTC
GGGGATGCGC TCGAGTTCTA TCAGGGCCGA CTGAAGCTGC CAAATCTCGA CAAGGTACTT
CCGTTGCCTC CCGCACCGTT GCCGAAATGG GATGGCAAAG TACAGACGTT GATCGACGGC
GCAAAGGCTG TGACCCCGGC CCCCAAACCA CAGAAGAGTG CGGCGCTGCA AGGTCGCGAA
TTTATTCCGA GCGGGTATGC CGTGGCGGCA CGAGAACGAA GCATGATGGT CGTCACGGGC
AACGATCCGG TACCGCTCGA CGGCTATTGG CTCGCACTGT ATGGTCCGCC GTCGATCTCC
AAGGCCGACT TGATTCCCGC CCGGCAGAAC ACACCGGAGC GCTATCAAGT CGGCGAACGC
TTTGGGGCGC CGTCATTCGA CTGGCTGGCA GCAGACCGGG TGCAGTGGCA TTACCTTGGC
GAAGCCTATC CCCTCCCACC GCAACGGTAC GATTTTATGA AGCACATGAT CGAAACCGGG
CTGCTGCGCG AAGTCCCCGA GCCTGCTTCG CCAGTCCAAT GCACCGGTCA ACAGCGTTGC
CCGCTAACTG GAATATGGCA AGGTCACGTG GCTGCAGAGC ACCCGATGGC AACGCTTTAC
AATCGATGGA ATCGTCAAGC GTTCGTCGAG AAAGGCGGGG CATTTCCGCA TGCCGGAGAC
AGTTTCCTCG ATGTCGCCAT GACAGACGTG CAATGGACGT ACCTCGGCAG TCCGAATGCC
GAAACCGGTA TGCCCGGTAT CCATGCAATT GGAATGTAA
|
|---|
| Protein sequence | MSDLPRYEKL PLFNPHRKTF TCVYQDQHVP PVDPQAELWF QQALALDNPN IDYDKRDYGK
IYQLYMQAAE RNHWKAMLNI ASMILSDRQG VPTHDPETAI RWVEKAMKLG VPDAYDMMGI
YHQNGLVKGG DATSAYAFFQ RAADMGSPSA QTFIGTKTDA AHDDPGGEFW GNLPIATQML
ECAFAQGFGD AADALGLVYA RDNTSEGKTR ALKILHDGVK LGSAKCAHSL APEFRGLDLT
DGTNLVGHID KARAERYSKL GDALEFYQGR LKLPNLDKVL PLPPAPLPKW DGKVQTLIDG
AKAVTPAPKP QKSAALQGRE FIPSGYAVAA RERSMMVVTG NDPVPLDGYW LALYGPPSIS
KADLIPARQN TPERYQVGER FGAPSFDWLA ADRVQWHYLG EAYPLPPQRY DFMKHMIETG
LLREVPEPAS PVQCTGQQRC PLTGIWQGHV AAEHPMATLY NRWNRQAFVE KGGAFPHAGD
SFLDVAMTDV QWTYLGSPNA ETGMPGIHAI GM
|
|---|
| |