| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4331 |
|---|
| Symbol | |
|---|
| ID | 6180934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | + |
|---|
| Start bp | 1408386 |
|---|
| End bp | 1410419 |
|---|
| Gene Length | 2034 bp |
|---|
| Protein Length | 677 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641684098 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001811009 |
|---|
| Protein GI | 172063358 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.467615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTTG CCGCCGTCGC GCACGCGCAG GCCGATACGG CCGCCCGGCC AACGTCAACC
CCGACGCAGA CCACGCCGCT CGCGCCGATC TTCGTGACCG CGAACCCGCT GGGCGACACG
CAATTGATCG CACCGACCGC GCAACTGTCC GGCGACGCGC TGACGCGCCG CCAGGCCGAT
TCGCTCGGCG AGACGCTCAA CGGCCTTCCC GGCGTGTCGA CCACCACCTA CGGGCCGATG
GTCGGCCGTC CGATCATCCG CGGGATGGAC GGCGACCGGA TCCGGCTGCT GCAGAACGGC
GTCGCCGCCT ACGACGCATC GTCGCTGTCG TACGACCACG CGGTGCCGCA GGACCCGCTG
TCGATCGAGC GCGTCGAGAT CGTGCGCGGA CCGGCCGCGC TGCTGTACGG CGGCAACGCG
GTCGGCGGCG TCGTCAACAC GATCGACAAC CGGATTCCGC GCGAGGCGAT CGAAGGCGTG
GCGGGTGCGC TGGATGCACG CTACGGCGGC GCGAACTCGG TGCGCGCGGG CGCCGCGCAG
GTCGAAGGCG GCAACGGCCG CTTCGCGTTC CATGTCGACG CATTCGACCG CGAGGCCAGC
AAGCTGCGGA TTCCCAGCTA TGCGCGCAGC AGCGCGCAAC GCGCGATCGA CGGCCCCGAC
ACGCCGCAGC CGTACGGCAA CGTACCGAAC AGCGACGGCC GCGTGCACGG CGGCGCCGCC
GGCGCGTCGT ACACGTGGGC CGACGGTTTC GCGGGCCTGT CGTACAGCGG CTACGAATCG
AACTACGGCT CCGTCGCCGA GGAGGACGTG CGCCTGCGCA TGCGCCAGGA ACGGCTCGCG
TTCGCGTCCG AGGTGCGCAA CCTGAGCGGC CCGTTCACGA AGCTGAAGTT CGACTTCGCG
TACACCGACT ACCGCCACAA GGAAGTCGAC AACGGCGAGA CGGCGACCAC CTTCCGCAAC
CGCGGCTACG AAGCGCGCAT CGAGGCGCGG CATCGCAGGA TCGGCCCGTT CGAAGGCGCG
ATCGGCGTGC AGTTCGGCCG GAACACGTTC TCGGCGCTCG GCGATGAACT GCTCGTGCCG
TCGACGCGCA CGAACAGCGT CGCGCTGTTC GGCCTCGAGG AATGGCAGGT CGACCCGGCG
CTGAAGCTGA GCCTCGGCGG GCGCCTCGAG CACGTGAAGG TCGATCCCGA TCCGGCCGGC
GTCGAGAAAT TCGCGGGCGC GCAGCCGCGC GACTTCAACG CCGGCAGCGT ATCGGCCGGC
GCCCTCTTCT CGCTGACGCC CGTGTGGTCG GTCGCGGCGA ACGTTGCCTA CACGGAGCGT
GCGCCGACCT TCTACGAGCT GTACTCGAAC GGCCCGCACG ACGCGACCGG CCAGTTCCTG
ATCGGCAACC CGAACGCATC GAAGGAAAAG GCCGTGTCGA CCGACCTGTC GCTGCGCTAT
GCGAGCGGCC CGAACCGCGG CAGCGTCGGG GTGTTCTACA ACCGCTTCTC GAACTACCTG
ACCGAGTACA ACACGGGCCG CGTCGTGGAC GACGACGGCG AACCGGTCGC ACCCGGCGCC
GATGGCTCGC TCAACGAAGC GATCTATCGC GGCGTGCGCG CCGAGTTCTA CGGCGTCGAA
CTCGACGGCA AGTGGCGCGC GTTCTCGCGG CGCGGCCATA CGGTCGACCT GGAACTGACC
GCCGACTACA CGCATGCGCG CAACGTCGAC ACCGGCCAGC CGCTGCCGCG CATCGCGCCG
CTGCGCGCGA CGCTCGCGGC CGATTACGGT TACGGCCCGT TCGGCGCGCG CGCACAGGTC
ACGCATGCGT GGTCGCAGCA CCGCGTGCCC GACAACGACT TTCCGACCGA CGGCTACACG
TCGCTCGGCG TGATGCTCAC GTACAAGTTC CGCGTCGGCG CGACGCACTG GCTCGCATAC
CTGCGCGGCG ACAACCTGAC GAACCAGGAA ATCCGCTATG CGACTTCGGT CGTGCGCGGC
TTCGCCCCGC AGGGCGGCCG CAGCGTGATG GCCGGCCTGC GCACGACGTT CTGA
|
|---|
| Protein sequence | MLLAAVAHAQ ADTAARPTST PTQTTPLAPI FVTANPLGDT QLIAPTAQLS GDALTRRQAD
SLGETLNGLP GVSTTTYGPM VGRPIIRGMD GDRIRLLQNG VAAYDASSLS YDHAVPQDPL
SIERVEIVRG PAALLYGGNA VGGVVNTIDN RIPREAIEGV AGALDARYGG ANSVRAGAAQ
VEGGNGRFAF HVDAFDREAS KLRIPSYARS SAQRAIDGPD TPQPYGNVPN SDGRVHGGAA
GASYTWADGF AGLSYSGYES NYGSVAEEDV RLRMRQERLA FASEVRNLSG PFTKLKFDFA
YTDYRHKEVD NGETATTFRN RGYEARIEAR HRRIGPFEGA IGVQFGRNTF SALGDELLVP
STRTNSVALF GLEEWQVDPA LKLSLGGRLE HVKVDPDPAG VEKFAGAQPR DFNAGSVSAG
ALFSLTPVWS VAANVAYTER APTFYELYSN GPHDATGQFL IGNPNASKEK AVSTDLSLRY
ASGPNRGSVG VFYNRFSNYL TEYNTGRVVD DDGEPVAPGA DGSLNEAIYR GVRAEFYGVE
LDGKWRAFSR RGHTVDLELT ADYTHARNVD TGQPLPRIAP LRATLAADYG YGPFGARAQV
THAWSQHRVP DNDFPTDGYT SLGVMLTYKF RVGATHWLAY LRGDNLTNQE IRYATSVVRG
FAPQGGRSVM AGLRTTF
|
|---|
| |