| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4273 |
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| Symbol | |
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| ID | 6179812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1330607 |
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| End bp | 1331914 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641684042 |
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| Product | shikimate transporter |
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| Protein accession | YP_001810953 |
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| Protein GI | 172063302 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.156206 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCAA CCTTCGACAC CCTCGACGCC GCTGCCGGCG CCCGCGCGCG CAGCCAGGCC
CGCAAGGCCG CGATCGGCAG CTTTGTCGGC GCCGTCGTCG ACTGGTACGA CTTCCTGCTG
TACGGGATCG TCGCCGCGCT CGTATTCAAT TCGGAATTCT TCCCGAAGAT CAGCCCGACC
ATGGGCACGC TCGCGGCGTT CGCGACCTTC GGCGTCGGCT TCCTGTTCCG TCCGCTCGGC
GGGGTCGTGT TCGGCCATTT CGGCGACCGG CTCGGCCGCA AGCGGATGCT CGTGCTGACC
GTGATGCTGA TGGGGCTGTC GACCGTCGCG ATCGGCCTGC TGCCGGGTTT CGCGACGATC
GGCTGGTGGG CGCCCGTGCT GCTGGTGCTG ATGCGTGCGA TCCAGGGCTT CGCGGTCGGC
GGCGAATGGG GCGGCGCGGC GCTGATGGCC GTCGAGAGCG CGCCGAAGCA GAAGAAGGCG
TTCTACAGCA GCGGCGTGCA GGTCGGCTAC GGCGTCGGGC TCGTGCTGGC GACGGGGATC
GTGTCGATCC TCAGCCATAC GCTCGGCGAG GCCGCGTTCA AGTCGTGGGG CTGGCGCCTG
CCGTTCGTGT TCAGCATCGT GCTGGTGCTG ATCGGGCTGT GGGTCCGCAA GAGCATGGAC
GAGTCGCAGG AGTTCGTCGA GAAGGTCGAG CACGGCAACC GCAAGCTGCG CCTGCCGGTG
CTCGAAGCGC TGACGCGCCA TCCGAAGGCA TTCCTGCTGA TCGTCGCGCT GCGGCTCGCC
GAGCTGTTCA CGATGTATAT CGTCACGGCA TTCGCGCTCA GCTATTCGAC GTCGAACCTG
GGCCTGTCGC GCGACCTGTT CCTGAACATC GGCCTGCTGG TCGGCGCGGT GAGCTGCGTG
ACGATCCCGT GCTTCGCCTG GCTCGCCGAC CGCTTCGGCC TGCGCCGCAT CTACCTCATC
GGCGCGGTGA TCGGCCTCGT GTCGGCGGTG CCGTTCTTCG TCGCGCTGGA GTCGCGCTCG
ATCGCGTGGA TCGTCGTGTT CTCGATCCTG TTGGCCAATG CCGCGCACGA CATGGTCGTG
AGCGTCCAGC AGCCGCTCTT CACCGAGCTG TTCGGCGCGG AATACCGCTA CAGCGGCGCG
GGCGTCGGTT ATCAGTTCGC GAGTGTGGTC GGCGGCGGGT TCACCCCGTT CATCGCGGTG
GCGCTGGTCA GCATGGCCGG CGGTTCGTGG CACTTCGTCG CCGCTTATCT CGCGGTGGGC
TGCCTGATCT CGCTGGTGGT CGCCGCGCGG ATGCGGGCGG CGCAATGA
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| Protein sequence | MTPTFDTLDA AAGARARSQA RKAAIGSFVG AVVDWYDFLL YGIVAALVFN SEFFPKISPT
MGTLAAFATF GVGFLFRPLG GVVFGHFGDR LGRKRMLVLT VMLMGLSTVA IGLLPGFATI
GWWAPVLLVL MRAIQGFAVG GEWGGAALMA VESAPKQKKA FYSSGVQVGY GVGLVLATGI
VSILSHTLGE AAFKSWGWRL PFVFSIVLVL IGLWVRKSMD ESQEFVEKVE HGNRKLRLPV
LEALTRHPKA FLLIVALRLA ELFTMYIVTA FALSYSTSNL GLSRDLFLNI GLLVGAVSCV
TIPCFAWLAD RFGLRRIYLI GAVIGLVSAV PFFVALESRS IAWIVVFSIL LANAAHDMVV
SVQQPLFTEL FGAEYRYSGA GVGYQFASVV GGGFTPFIAV ALVSMAGGSW HFVAAYLAVG
CLISLVVAAR MRAAQ
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