| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4225 |
|---|
| Symbol | |
|---|
| ID | 6179190 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010552 |
|---|
| Strand | - |
|---|
| Start bp | 1281713 |
|---|
| End bp | 1282423 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641683994 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_001810905 |
|---|
| Protein GI | 172063254 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.678492 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCACCCC GTATCGTCCC GCCCGCACTG AAAGTCATCG AATCGGAAAC GATGGCCGAC
AAGGTCTACC AGCAACTGCG CGAAGCGCTG ATGAGCGGCC GTTTCGCGCC CGGCCAGGCG
CTGAGCCTGC GCAGCGTCGC CGAGGCGGTC GGCTCGTCGA CGATGCCCGT GCGCGCCGCG
CTCACGCGGC TGCGCGCCGA ACGCGCGCTG GTCGACGGTC CGAACCGCGC GCTCGTCGTG
CCACCGATGA CGCTCGACAT GCTCGACGAA CTGCGCGACG TGCGGATCGC CCTCGAAGGA
TGCATCGCCG AACGCGCGTG CGCGCGGATG ACCGACGCGC AGATCGCCGC CGTGCGCAAG
ACCTGCGAAA CGATGCAGGC GCAGGTCGAG GCCGGCCGTT CGCGCGCCTA CCTGCAGAGC
AATTTCGCGT TCCACAGCGC GATCTATGCG CACGGCGCGA GCGAAAGCAC GCTCGCGATC
GTCGAGAACC TGTGGATGCG CGTCGGGCCG TTCCTCAACA TGGTCGCGCT CGATATCCCG
CACATGCGGC GCTCGATGGA TGCGCACCGC GCGATCGTCG ACGCGCTCGA ACGGCGCGAC
GGCACCGGCG TACGTGCCGG CATCGCGCTC GACATCGGCG GCGCCGCGCA CGATCTCGCC
GAAACGCTGC GCGCCGAGCA GACGCCGCGG CGCGCGAACG CGAAGCCGTA G
|
|---|
| Protein sequence | MAPRIVPPAL KVIESETMAD KVYQQLREAL MSGRFAPGQA LSLRSVAEAV GSSTMPVRAA
LTRLRAERAL VDGPNRALVV PPMTLDMLDE LRDVRIALEG CIAERACARM TDAQIAAVRK
TCETMQAQVE AGRSRAYLQS NFAFHSAIYA HGASESTLAI VENLWMRVGP FLNMVALDIP
HMRRSMDAHR AIVDALERRD GTGVRAGIAL DIGGAAHDLA ETLRAEQTPR RANAKP
|
|---|
| |