Gene BamMC406_4209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_4209 
Symbol 
ID6180023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010552 
Strand
Start bp1262673 
End bp1263473 
Gene Length801 bp 
Protein Length266 aa 
Translation table11 
GC content68% 
IMG OID641683978 
ProductLuxR family transcriptional regulator 
Protein accessionYP_001810889 
Protein GI172063238 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.602642 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.235438 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCGAC TCTTCTCCGA AATCGCGATG CACCAGGCGC TCGGCCGCGC GATCGATCAT 
CTCGGCCAGC CGCGCTTCTG GCGGTTCCTG GTGCTGCTGC TCAACGAAAT GGTGCCGTTC
GACAACGCGC TCGCGACCGC GATCGGCCGC GACGGCGTGC CGCTCGTGCT CGACGAATAC
GACACGGGCG GCACCGACAG CGCGTCGCCG GTGCCGCTTT ACCTCAACGG GTTATATCTG
CTCGATCCGT TCCTGCAGGC CGCGCACGAC GGGCTCGCCG ACGGCTGCTA CCGGCTCGAG
GAAGTCGCGC CCGACCTGTT CCGGCAGAGC GAGTATTTCC TGAGCTACTT CCGCGATGCG
GTCGGCGACG ACGAAATCCA GATCCTGCTG CGGCCGAACC GCGACCTGCT GCTGTCGTTG
TCGCTCGGCG CGGCCACGCG CTTCGACGTC GAGCCGCTCG GCAAGCTGAC GGCCGCGATG
CCGTGGGTGC TCGCGGCGAT CCGGCAGCAC TGGCGGCTGG TGGGCGATGC CGCGCGCGCG
ACCCCCGACG ACGATCTCGG CGCGCGCGTC GAGCAGGCGC TCGCGCGCTT CGGCGCGGGC
GTGCTGACAG AGCGCGAGAT GTCGATCGCG CGAATGGTGC TGCGCGGCAA TTCGTCGAAG
GCGATCGCGG AGCGGCTCGC GATTTCACCG GAGACGGTGA AGGTGCATCG GCGGCATCTC
TACGCGAAGC TCGGGATCTC GTCCCAGCCG GAGCTGTTCT CGCGGTTCAT TCACGCGCTG
GGAGAGCATG CGTCGGGGTA A
 
Protein sequence
MDRLFSEIAM HQALGRAIDH LGQPRFWRFL VLLLNEMVPF DNALATAIGR DGVPLVLDEY 
DTGGTDSASP VPLYLNGLYL LDPFLQAAHD GLADGCYRLE EVAPDLFRQS EYFLSYFRDA
VGDDEIQILL RPNRDLLLSL SLGAATRFDV EPLGKLTAAM PWVLAAIRQH WRLVGDAARA
TPDDDLGARV EQALARFGAG VLTEREMSIA RMVLRGNSSK AIAERLAISP ETVKVHRRHL
YAKLGISSQP ELFSRFIHAL GEHASG