| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_4187 |
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| Symbol | |
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| ID | 6179460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010552 |
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| Strand | - |
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| Start bp | 1234453 |
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| End bp | 1235967 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641683956 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001810867 |
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| Protein GI | 172063216 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.164619 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.718277 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGCGA TGCGCGCCCG CCTGCACCCG ACGGCCGCCG TGACCGCTGT CGCGCTTGCG
GCGCTCGCCG GTTGCACGGT CGGCCCCGAC TACCGGCGCC CTGCCGTCGA CACGCCGGCC
GCGTGGCGGC TCGACCCGGC CGACGCGTAC TGGCACCCGG CCGCGCCGGC CCGCGCGCCG
CTCGACCCGG CGTGGTGGAC CGCGTTCGGC GACGCTCAGC TCGACGCGCT GGAAGCCGAC
GCGCTGCGCA ACAACCAGAG CCTGAAGGCC GTCGCCGCGC GCTACGACCA GGCGAAGGCC
ACGCTCGCGT CGGTCGCGTC CGCGCAGTAT CCGGCCGTCG GGCTGAACGC GAGCGGCCAG
CGCTTCAAGA TCTCCGCCGA TCGGCCGCAA ACCAATTACG CGACGAAAAG CATGTCGACC
GTGCAGAACG AGATCCAGGT CGGCGCGAGC GTCAGCTACG AACTCGACCT GTTCGGCCGC
GTGCGGCGCA GCGTCGAATC CGCGCAGGCT GGCTCCGAGC AGGCACGCGA CGATTTCGCG
AACGCGCGCC TCGTGCTGAG CGCCGATCTC GCGTCGAGCT ACTTCGCGCT GCGCGAGCTC
GACACCGAGA TCGACGTCGT CAAGCGCTCG ATCGACCTGC AGCAGAAGGC GCTCGACTAC
GTGAGCGCGC GCCACGAGCT CGGCGCCGTG TCCGGCCTCG ACCTGTTCCA GCAACGCTCG
CAGCTCGATG CGACGCGCAC GCAGGCGCAG TTGCTGATCC AGCAGCGCGC GCAGATCGAG
ACGGCGATCG CGACGCTGGT CGGCACGCCG GCCCCGGCGT TCTCACTGCC GCCGCGCGTG
GTGCCGATCA ACGCGCCCGC GCTGCCGACC GGGATGCCGA GCGACCTGCT GCAGCGGCGG
CCCGACGTCG CGTCGGCCGA GCGCGCGATG GCCGCCGCGA ACGCGCAGAT CGGCGTCGCG
CGCGCCGCGT ACTTCCCGCG CATCGCGCTG TCGCCGGACA TCGGCTGGGA CGCGACGCAC
TTCTCCGGCC TGTTTACCGT GCCGGCGCTG CTGTGGTCGC TCGGCGCGTC GGTCAGCCAG
CCGCTGTTCC AAGGCGGCAA GCTGAAGGCC GGTGTCGATT TCGCACAGGC CGGCTACGTG
GCCGCGCAGG CCAGCTACCG GCAGACCGTG CTCACCGCGT TCCAGGAGGT GCAGAATGCG
GTGACAGGCC TGTCGGTGCT GGCACAGGCC GCGCAGCAGG CGTCGGCGGC CGTCGACGAT
GCGCGCAGGC TCGTGTCGCT CGCGCAGGAC CGCTATACGG GCGGCCTGAC GCCGTTCATC
GACGTGCTGA CGGCCCAGCA GCAGCTACTG ACGAGCGAGC GCCAGGCCGT GCAGATCCAG
GGCCAGCGCG CGGCGCTCGT CGTGTTTCTC GCGAAGGCGC TCGGCGGCGG CTGGGATGGC
GGCGCGACGG ACGCCGCCAC GCCGACCGAT GTCGCGACAG CCAGCCCGCC GCCCACCGCG
AGCGTCGGCC CCTAA
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| Protein sequence | MSAMRARLHP TAAVTAVALA ALAGCTVGPD YRRPAVDTPA AWRLDPADAY WHPAAPARAP
LDPAWWTAFG DAQLDALEAD ALRNNQSLKA VAARYDQAKA TLASVASAQY PAVGLNASGQ
RFKISADRPQ TNYATKSMST VQNEIQVGAS VSYELDLFGR VRRSVESAQA GSEQARDDFA
NARLVLSADL ASSYFALREL DTEIDVVKRS IDLQQKALDY VSARHELGAV SGLDLFQQRS
QLDATRTQAQ LLIQQRAQIE TAIATLVGTP APAFSLPPRV VPINAPALPT GMPSDLLQRR
PDVASAERAM AAANAQIGVA RAAYFPRIAL SPDIGWDATH FSGLFTVPAL LWSLGASVSQ
PLFQGGKLKA GVDFAQAGYV AAQASYRQTV LTAFQEVQNA VTGLSVLAQA AQQASAAVDD
ARRLVSLAQD RYTGGLTPFI DVLTAQQQLL TSERQAVQIQ GQRAALVVFL AKALGGGWDG
GATDAATPTD VATASPPPTA SVGP
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